docker-compose.yml

version: '3.4'

services:
  template_rstudio: # swap 'template' for you project name (all lower case no specials other than _)
    build:
      context: ./rstudio_docker
    container_name: template_rstudio  # swap 'template' for you project name (all lower case no specials other than _)
    volumes:
      # to have access to you host's git config include:
      # - /home/${USERNAME}/.gitconfig:/home/rstudio/.gitconfig
      # This allows you to use a global renv cache on your host system shared between your containers
      - /opt/local/renv/cache:/home/rstudio/.cache/R
      # To keep your Rstudio config customistaions from your host system include:
      - ./rstudio_config_dir:/home/rstudio/.config/rstudio
      ###!! THE PROJECT DATA DIRECTORY !!###
      - /home/aabdallah/Desktop/RProjects/ATAC_Reprogramming_of_Fibroblasts_REPRO:/home/rstudio/project
    restart:
      unless-stopped
    ports:
      - 4444:8787 # 4415 is a randomly selected port number, I assign each project it's own so I can have
                  # multiple running at once without them conflicting.
    # The RStudio environment file sets the details of the RStudio user and information for renv
    env_file: ./rstudio_docker/rstudio.env