From 99dc922c45cdbe9cf76d76d16e5efa8456c9d674 Mon Sep 17 00:00:00 2001 From: Jonathan Berrisch Date: Tue, 19 Mar 2024 14:19:03 +0100 Subject: [PATCH 1/9] Update posit snapshot --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index bc5f487..c9f2d6e 100644 --- a/Dockerfile +++ b/Dockerfile @@ -142,7 +142,7 @@ ENV R_VERSION=4.3.2 # Set RSPM snapshot see: # https://packagemanager.posit.co/client/#/repos/cran/setup?r_environment=other&snapshot=2023-10-04&distribution=ubuntu-22.04 -ENV R_REPOS=https://packagemanager.posit.co/cran/__linux__/jammy/2024-02-02 +ENV R_REPOS=https://packagemanager.posit.co/cran/__linux__/jammy/2024-03-19 COPY install_scripts/install_r.sh /install_scripts/install_r.sh COPY package_lists/r_packages.txt /package_lists/r_packages.txt From 22383cba42c5d7f3ee8a35cbeaa04a130461e85c Mon Sep 17 00:00:00 2001 From: Jonathan Berrisch Date: Thu, 21 Mar 2024 09:06:13 +0100 Subject: [PATCH 2/9] Add nbclient python package --- package_lists/python_packages.txt | 1 + 1 file changed, 1 insertion(+) diff --git a/package_lists/python_packages.txt b/package_lists/python_packages.txt index 369078f..064c470 100644 --- a/package_lists/python_packages.txt +++ b/package_lists/python_packages.txt @@ -14,6 +14,7 @@ Jinja2 kaleido matplotlib meteostat +nbclient nbformat numdifftools numpy From dcba7767b1046995b15dcb6456d6ce4e3c81f038 Mon Sep 17 00:00:00 2001 From: Jonathan Berrisch Date: Fri, 22 Mar 2024 15:47:44 +0100 Subject: [PATCH 3/9] Bump R to 4.3.3, Update posit packagemanager --- Dockerfile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Dockerfile b/Dockerfile index c9f2d6e..f069fed 100644 --- a/Dockerfile +++ b/Dockerfile @@ -138,11 +138,11 @@ RUN chmod +x install_scripts/install_latex.sh &&\ ENV PATH="/usr/local/texlive/bin/x86_64-linux:${PATH}" # Install R -ENV R_VERSION=4.3.2 +ENV R_VERSION=4.3.3 # Set RSPM snapshot see: # https://packagemanager.posit.co/client/#/repos/cran/setup?r_environment=other&snapshot=2023-10-04&distribution=ubuntu-22.04 -ENV R_REPOS=https://packagemanager.posit.co/cran/__linux__/jammy/2024-03-19 +ENV R_REPOS=https://packagemanager.posit.co/cran/__linux__/jammy/2024-03-21 COPY install_scripts/install_r.sh /install_scripts/install_r.sh COPY package_lists/r_packages.txt /package_lists/r_packages.txt From cb90dd6e300afd7f3ecaf1cbb76661ea4d295153 Mon Sep 17 00:00:00 2001 From: Jonathan Berrisch Date: Wed, 27 Mar 2024 09:01:38 +0100 Subject: [PATCH 4/9] Add gridSVG package --- package_lists/r_packages.txt | 1 + 1 file changed, 1 insertion(+) diff --git a/package_lists/r_packages.txt b/package_lists/r_packages.txt index 0d5e51c..a72d7ab 100644 --- a/package_lists/r_packages.txt +++ b/package_lists/r_packages.txt @@ -42,6 +42,7 @@ ggthemes gifski glmnet gridExtra +gridSVG grImport2 gt Hmisc From 0d7128c3f2dcae1ba9ae488a2f2efa935e8e384c Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Apr 2024 16:14:12 +0000 Subject: [PATCH 5/9] Bump ubuntu from `f9d633f` to `77906da` Bumps ubuntu from `f9d633f` to `77906da`. --- updated-dependencies: - dependency-name: ubuntu dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index f069fed..a262a32 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -FROM ubuntu:jammy@sha256:f9d633ff6640178c2d0525017174a688e2c1aef28f0a0130b26bd5554491f0da +FROM ubuntu:jammy@sha256:77906da86b60585ce12215807090eb327e7386c8fafb5402369e421f44eff17e SHELL ["/bin/bash", "-c"] From 2c85896d645a1d635b98cc4c1fd4ce79663e6b8d Mon Sep 17 00:00:00 2001 From: Jonathan Berrisch Date: Tue, 16 Apr 2024 17:08:14 +0200 Subject: [PATCH 6/9] Add mysql related python packages --- package_lists/python_packages.txt | 2 ++ 1 file changed, 2 insertions(+) diff --git a/package_lists/python_packages.txt b/package_lists/python_packages.txt index 064c470..7c8ff0e 100644 --- a/package_lists/python_packages.txt +++ b/package_lists/python_packages.txt @@ -14,6 +14,7 @@ Jinja2 kaleido matplotlib meteostat +mysqlclient nbclient nbformat numdifftools @@ -29,6 +30,7 @@ redis requests scikit-learn scipy +sqlalchemy statsmodels tdqm uvicorn From 2f12deae55d94334bef832728116766faf3efa71 Mon Sep 17 00:00:00 2001 From: Jonathan Berrisch Date: Tue, 16 Apr 2024 18:07:23 +0200 Subject: [PATCH 7/9] Fix dependencies --- Dockerfile | 2 ++ 1 file changed, 2 insertions(+) diff --git a/Dockerfile b/Dockerfile index a262a32..cb00e5c 100644 --- a/Dockerfile +++ b/Dockerfile @@ -45,6 +45,8 @@ RUN echo "ttf-mscorefonts-installer msttcorefonts/accepted-mscorefonts-eula sele gdb \ ssh-client \ fontconfig \ + pkg-config \ + default-libmysqlclient-dev \ ttf-mscorefonts-installer \ locales &&\ locale-gen en_US.UTF-8 &&\ From ce267789fb9358b4274582fa8bf92dc3778bc59f Mon Sep 17 00:00:00 2001 From: Jonathan Berrisch Date: Mon, 22 Apr 2024 14:27:40 +0200 Subject: [PATCH 8/9] Add geojsonsf package --- package_lists/r_packages.txt | 1 + 1 file changed, 1 insertion(+) diff --git a/package_lists/r_packages.txt b/package_lists/r_packages.txt index a72d7ab..d10d249 100644 --- a/package_lists/r_packages.txt +++ b/package_lists/r_packages.txt @@ -31,6 +31,7 @@ gamlss.dist gamlss.lasso GAS gdata +geojsonsf GGally gganimate ggcorrplot From c67de56d34d22f916c55504b95515f1f3de6c6f9 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 1 May 2024 16:00:31 +0000 Subject: [PATCH 9/9] Bump ubuntu from `77906da` to `6d7b5d3` Bumps ubuntu from `77906da` to `6d7b5d3`. --- updated-dependencies: - dependency-name: ubuntu dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index cb00e5c..5452af2 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -FROM ubuntu:jammy@sha256:77906da86b60585ce12215807090eb327e7386c8fafb5402369e421f44eff17e +FROM ubuntu:jammy@sha256:6d7b5d3317a71adb5e175640150e44b8b9a9401a7dd394f44840626aff9fa94d SHELL ["/bin/bash", "-c"]