From 91d4d325f469994aa9fb0f0904b9ed1673d1f7f4 Mon Sep 17 00:00:00 2001
From: Manish Venumuddula <80477243+manishvenu@users.noreply.github.com>
Date: Wed, 22 Jan 2025 18:28:59 -0700
Subject: [PATCH] Fix Demo Bugs (#43)

* Bathy Bug

* Remove tides from pytet demo

* Try adding ipykernel
---
 demos/reanalysis-forced.ipynb  | 5 ++++-
 docs/requirements.txt          | 1 +
 regional_mom6/regional_mom6.py | 4 ++--
 3 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/demos/reanalysis-forced.ipynb b/demos/reanalysis-forced.ipynb
index d25e9dc0..be88ec6a 100644
--- a/demos/reanalysis-forced.ipynb
+++ b/demos/reanalysis-forced.ipynb
@@ -355,6 +355,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
+    "# NBVAL_SKIP\n",
+    "# Tidal files are not available in the repository, and must be requested from the TPXO website\n",
     "expt.setup_boundary_tides(\n",
     "        tide_h_path,\n",
     "        tide_u_path,\n",
@@ -440,7 +442,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "expt.setup_run_directory(surface_forcing = \"era5\", with_tides = True)"
+    "expt.setup_run_directory(surface_forcing = \"era5\", with_tides = False)\n",
+    "# When tides files are found, run the previous command with parameter with_tides = True"
    ]
   },
   {
diff --git a/docs/requirements.txt b/docs/requirements.txt
index 5dc24ef8..d53d2f05 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -2,3 +2,4 @@ myst-parser
 sphinx-book-theme
 nbsphinx
 IPython
+ipykernel
\ No newline at end of file
diff --git a/regional_mom6/regional_mom6.py b/regional_mom6/regional_mom6.py
index 17738838..347b71d2 100644
--- a/regional_mom6/regional_mom6.py
+++ b/regional_mom6/regional_mom6.py
@@ -2022,8 +2022,8 @@ def tidy_bathymetry(
         bathymetry = xr.Dataset(
             {"depth": (["ny", "nx"], bathymetry[vertical_coordinate_name].values)},
             coords={
-                "lon": (["nx", "ny"], bathymetry[longitude_coordinate_name].values),
-                "lat": (["nx", "ny"], bathymetry[latitude_coordinate_name].values),
+                "lon": (["ny", "nx"], bathymetry[longitude_coordinate_name].values),
+                "lat": (["ny", "nx"], bathymetry[latitude_coordinate_name].values),
             },
         )
         bathymetry.attrs["depth"] = "meters"