.travis.yml

sudo: false

matrix:
  include:
  - python: "3.6"
    language: python
    cache:
      directories:
        - $HOME/.cache/pip
        - /tmp/proto3.3.2
    install:
      - pip install pip --upgrade
    # RDFLib requres html5lib;  html5lib requires setuptools version 18.5 or above;
      - pip install -U setuptools
      - python setup.py sdist
      - pip install dist/candig*.tar.gz -c constraints.txt
    # every installable in setup.py's entry_points should be tested here
      - candig_configtest --version
      - candig_server --version
      - candig_repo --version
    before_script:
      - pip install -r dev-requirements.txt
      - python scripts/build_test_data.py
      - ingest --version
      - ingest tests/data/registry.db dataset1 tests/data/sample_clin_metadata.json
      - ingest tests/data/registry.db dataset1 tests/data/sample_pipe_metadata.json
    before_install:
      - bash tools/travis-install-protoc.sh 3.3.2
      - export PATH=/tmp/proto3.3.2/bin:$PATH
    # run_tests.py runs everything under the script: tag so only put commands
    # under it that we want to run (and want to be able to run) as local tests
    script:
      - flake8 configtest_dev.py convert_error_code.py
           repo_dev.py server_dev.py
           setup.py
           tests candig scripts
      - python -mnose tests
              --with-coverage --cover-package candig.server
              --cover-inclusive --cover-min-percentage 75
              --cover-branches --cover-erase
              --ignore-files="test_authflows.py"
      - make clean -C docs
      - make -C docs
    after_success:
      # run codecov
      - bash <(curl -s https://codecov.io/bash)
  - service: docker
    language: python
    python: 3.6
    addons:
      firefox: latest
      hosts:
        - candig
        - candigauth
    cache:
      directories:
        - $HOME/.cache/pip
#        - $HOME/virtualenv/python3.6.7
#        - $HOME/virtualenv/python3.6
    before_cache:
      - rm -f $HOME/.cache/pip/log/debug.log
    env:
      - DOCKER_COMPOSE_VERSION=1.24.1
      - COMPOSE_DIR=/tmp/compose
      - IMAGE_NAME=c3genomics/candig_server
      - CANDIG_COMPOSE_VERSION=v2.0.1
    before_install:
      - sudo rm /usr/local/bin/docker-compose
      - curl -L https://github.com/docker/compose/releases/download/${DOCKER_COMPOSE_VERSION}/docker-compose-`uname -s`-`uname -m` > docker-compose
      - chmod +x docker-compose
      - sudo mv docker-compose /usr/local/bin
      - mkdir -p ${COMPOSE_DIR}
      - curl -L https://api.github.com/repos/CanDIG/candig_compose/tarball/${CANDIG_COMPOSE_VERSION} | tar --strip-components=1  -zxvf -
        -C ${COMPOSE_DIR}
      - cd ${TRAVIS_BUILD_DIR}
      - docker build --tag  ${IMAGE_NAME} .
    install:
      - cd "${TRAVIS_BUILD_DIR}"
      - pip install -r dev-requirements.txt
#      - wget https://chromedriver.storage.googleapis.com/73.0.3683.68/chromedriver_linux64.zip
      - wget https://github.com/mozilla/geckodriver/releases/download/v0.26.0/geckodriver-v0.26.0-linux64.tar.gz
#      - unzip chromedriver_linux64.zip
      - tar -xvf geckodriver-v0.26.0-linux64.tar.gz
      - sudo mv geckodriver /usr/local/bin
      - chmod +x /usr/local/bin/geckodriver
#      - chmod 777  chromedriver
#      - sudo mv  chromedriver /usr/local/bin/.
      - sudo apt-get install chromium-chromedriver chromium-browser
      - sudo rm  /usr/bin/google-chrome && sudo ln -s /usr/bin/chromium-browser  /usr/bin/google-chrome
    before_script:
      - cd ${COMPOSE_DIR}
      - ./create_compose.sh -o "${TRAVIS_BUILD_DIR}/tests/integration/compose_config"
      - docker-compose up -d
      - |
           i=0
           while !  docker logs candigauth | grep "Admin console listening on http://127.0.0.1:9990" && (("$i" < 25 ))
           do
             sleep 1
             i=$((i+1))
           done
      - ./candig_setup.sh -o "${TRAVIS_BUILD_DIR}/tests/integration/compose_config" -k localhost:8081 -t localhost
      - sleep 45
    script:
      - cd "${TRAVIS_BUILD_DIR}"
      - python -mnose -s tests/integration