genomic_ingest.json

[
    {
        "program_id": "SYNTH_02",
        "genomic_file_id": "HG00096.cnv.vcf",
        "main": {
            "access_method": "http://s3.us-east-1.amazonaws.com/1000genomes/release/20130502/ALL.chr22.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz?public=true",
            "name": "HG00096.cnv.vcf.gz"
        },
        "index": {
            "access_method": "http://s3.us-east-1.amazonaws.com/1000genomes/release/20130502/ALL.chr22.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz.tbi?public=true",
            "name": "HG00096.cnv.vcf.gz.tbi"
        },
        "metadata": {
            "sequence_type": "wgs",
            "data_type": "variant",
            "reference": "hg38"
        },
        "samples": [
            {
                "genomic_file_sample_id": "HG00096",
                "submitter_sample_id": "SAMPLE_0017"
            }
        ]
    },
    {
        "program_id": "SYNTH_01",
        "genomic_file_id": "multisample_1",
        "main": {
            "access_method": "file:////app/htsget_server/data/files/multisample_1.vcf.gz",
            "name": "multisample_1.vcf.gz"
        },
        "index": {
            "access_method": "file:////app/htsget_server/data/files/multisample_1.vcf.gz.tbi",
            "name": "multisample_1.vcf.gz.tbi"
        },
        "metadata": {
            "sequence_type": "wgs",
            "data_type": "variant",
            "reference": "hg38"
        },
        "samples": [
            {
                "genomic_file_sample_id": "TUMOR",
                "submitter_sample_id": "SAMPLE_0002"
            },
            {
              "genomic_file_sample_id": "NORMAL",
              "submitter_sample_id": "SAMPLE_0003"
            }
        ]
    },
    {
        "program_id": "SYNTH_02",
        "genomic_file_id": "multisample_2",
        "main": {
            "access_method": "file:////app/htsget_server/data/files/multisample_2.vcf.gz",
            "name": "multisample_2.vcf.gz"
        },
        "index": {
            "access_method": "file:////app/htsget_server/data/files/multisample_2.vcf.gz.tbi",
            "name": "multisample_2.vcf.gz.tbi"
        },
        "metadata": {
            "sequence_type": "wgs",
            "data_type": "variant",
            "reference": "hg38"
        },
        "samples": [
            {
                "genomic_file_sample_id": "TUMOR",
                "submitter_sample_id": "SAMPLE_0020"
            },
            {
                "genomic_file_sample_id": "NORMAL",
                "submitter_sample_id": "SAMPLE_0019"
            }
        ]
    },
    {
        "program_id": "SYNTH_01",
        "genomic_file_id": "NA02102",
        "main": {
            "access_method": "file:////app/htsget_server/data/files/NA02102.bam",
            "name": "NA02102.bam"
        },
        "index": {
            "access_method": "file:////app/htsget_server/data/files/NA02102.bam.bai",
            "name": "NA02102.bam.bai"
        },
        "metadata": {
            "sequence_type": "wgs",
            "data_type": "read",
            "reference": "hg38"
        },
        "samples": [
            {
                "genomic_file_sample_id": "NA02102",
                "submitter_sample_id": "SAMPLE_0004"
            }
        ]
    }
]