From ef760b0ebfc6d143da33381399d06ab0e5520e8f Mon Sep 17 00:00:00 2001 From: David Brownlee Date: Tue, 22 Oct 2024 11:58:15 -0400 Subject: [PATCH] pytest corrections for schema updates. --- tests/raw_data/PrimaryDiagnosis.csv | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/tests/raw_data/PrimaryDiagnosis.csv b/tests/raw_data/PrimaryDiagnosis.csv index 4fc79d6..03cdefc 100644 --- a/tests/raw_data/PrimaryDiagnosis.csv +++ b/tests/raw_data/PrimaryDiagnosis.csv @@ -1,9 +1,9 @@ submitter_donor_id, primary_site, submitter_primary_diagnosis_id, date_of_diagnosis, cancer_type_code, basis_of_diagnosis, clinical_tumour_staging_system, clinical_t_category, clinical_n_category, clinical_m_category, clinical_stage_group, laterality, pathological_t_category, pathological_n_category, pathological_m_category, pathological_stage_group DONOR_1,Esophagus,PD_1,1/1/2018,C43.1,Cytology,International Neuroblastoma Staging System,,,,Stage 1,Left,T3e,N1,MX, DONOR_2,Eye and adnexa,PD_2,1/3/2020,C04.9,Specific tumour markers,Rai staging system,,,,Stage 1A,Bilateral,,,,In situ -DONOR_3,Floor of mouth,PD_3,1/5/2018,C43.9,Not available,AJCC 7th edition,T0,N0,M1a,,Left,,,,Stage IIIA -DONOR_3,Tongue,DUPLICATE_ID,1/5/2018,C43.9,Not available,AJCC 7th edition,T0,N0,M1a,,Left,,,,Stage IIIB -DONOR_4,,PD_4,1/5/2018,C64.9,Death certificate only,Revised International staging system (RISS),,,,Stage 1B,"Unilateral, side not specified",,,,Stage IIS -DONOR_5,Gum,PD_5,1/3/2020,C64.9,,Revised International staging system (RISS),T1,N0a,M0,,Left,,,,Stage IIBES +DONOR_3,Floor of mouth,PD_3,1/5/2018,C43.9,Not available,AJCC cancer staging system,T0,N0,M1a,,Left,,,,Stage IIIA +DONOR_3,Tongue,DUPLICATE_ID,1/5/2018,C43.9,Not available,AJCC cancer staging system,T0,N0,M1a,,Left,,,,Stage IIIB +DONOR_4,,PD_4,1/5/2018,C64.9,Death certificate only,Revised International staging system (R-ISS),,,,Stage 1B,"Unilateral, side not specified",,,,Stage IIS +DONOR_5,Gum,PD_5,1/3/2020,C64.9,,Revised International staging system (R-ISS),T1,N0a,M0,,Left,,,,Stage IIBES DONOR_6,"Heart, mediastinum, and pleura",PD_6,1/5/2018,C02.2,Specific tumour markers,International Neuroblastoma Staging System,,,,Stage C,"Unilateral, side not specified",,,,Stage IIIB DONOR_2,Floor of mouth,PD_2_1,6/3/2018,C43.9,Histology of a primary tumour,Binet staging system,,,,Stage B,Bilateral,,,,