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Add collected ambiguously classified undirected WGBS reads in QC-JSON #47

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vinjana opened this issue Feb 15, 2019 · 0 comments
Open

Add collected ambiguously classified undirected WGBS reads in QC-JSON #47

vinjana opened this issue Feb 15, 2019 · 0 comments

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@vinjana
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vinjana commented Feb 15, 2019

Currently, reads whose orientation can not unambiguously be classified by WGBS_read_pair_reconstruction.py are simply ignored and no statistics are reported.

  1. Collect stats and add to QC-JSON
  2. Optional saving of ambiguously classified reads (for debugging and rescue attempts)
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