data_urls.txt

Uniprot_sprot.fasta:
ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/uniprot_sprot.fasta.gz

Uniprot_trambl.fasta.gz:
ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/uniprot_trembl.fasta.gz

hairpin.fa.gz (miRBase):
ftp://mirbase.org/pub/mirbase/CURRENT/hairpin.fa.gz

mature.fa.gz (miRBase):
ftp://mirbase.org/pub/mirbase/CURRENT/mature.fa.gz

miRBase:
ftp://mirbase.org/pub/mirbase/CURRENT/miRNA.dat.gz

gene2Refseq:
ftp://ftp.ncbi.nih.gov/gene/DATA/gene2refseq.gz

gene2ensembl:
ftp://ftp.ncbi.nih.gov/gene/DATA/gene2ensembl.gz

uniprot_mapping (including GO terms and Gene --> Uniprot)
ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping_selected.tab.gz

1. UniProtKB-AC
2. UniProtKB-ID
3. GeneID (EntrezGene)
4. RefSeq
5. GI
6. PDB
7. GO
8. UniRef100
9. UniRef90
10. UniRef50
11. UniParc
12. PIR
13. NCBI-taxon
14. MIM
15. UniGene
16. PubMed
17. EMBL
18. EMBL-CDS
19. Ensembl
20. Ensembl_TRS
21. Ensembl_PRO
22. Additional PubMed