From 19350ef1c045f8de0f13028fc76125530d8e3c97 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Johannes=20K=C3=B6ster?= Date: Mon, 9 Oct 2017 16:58:55 +0200 Subject: [PATCH] Comments. --- .travis.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.travis.yml b/.travis.yml index 85c5929..525f343 100644 --- a/.travis.yml +++ b/.travis.yml @@ -19,7 +19,9 @@ install: - conda create -q -n snakemake snakemake python=$TRAVIS_PYTHON_VERSION - conda create -q -n star star - source activate star + # create STAR index (too big to live in git) - mkdir .test/ref/index - STAR --runMode genomeGenerate --genomeDir .test/ref/index --genomeFastaFiles .test/ref/genome.fasta - source activate snakemake + # run the workflow - snakemake --use-conda --directory .test