diff --git a/scripts/deseq2-init.R b/scripts/deseq2-init.R index 82cb16b..c7cb72d 100644 --- a/scripts/deseq2-init.R +++ b/scripts/deseq2-init.R @@ -14,4 +14,4 @@ dds <- dds[ rowSums(counts(dds)) > 1, ] # TODO optionally allow to collapse technical replicates dds <- DESeq(dds) -save(dds, file=snakemake.output[[1]]) +save(dds, file=snakemake@output[[1]])