From 52c9166fce39c5718493e678dd941019d17d0c94 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Johannes=20K=C3=B6ster?= Date: Wed, 11 Oct 2017 09:59:40 +0200 Subject: [PATCH] Uncompress fasta before creating the index. --- .travis.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.travis.yml b/.travis.yml index 6fe8dab..3948194 100644 --- a/.travis.yml +++ b/.travis.yml @@ -21,7 +21,8 @@ install: - source activate star # create STAR index (too big to live in git) - mkdir .test/ref/index - - STAR --runMode genomeGenerate --genomeDir .test/ref/index --genomeFastaFiles .test/ref/Homo_sapiens.GRCh38.dna.chromosome.21.fa.gz + - gzip -d .test/ref/Homo_sapiens.GRCh38.dna.chromosome.21.fa + - STAR --runMode genomeGenerate --genomeDir .test/ref/index --genomeFastaFiles .test/ref/Homo_sapiens.GRCh38.dna.chromosome.21.fa script: - source activate snakemake