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Bug shows "FileNotFoundError: [Errno 2] No such file or directory: 'BestBinset_outlier_refined_filtrated_retrieved_checkm/storage/'" #39

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1023011930 opened this issue Jun 6, 2024 · 8 comments

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@1023011930
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Basalt_log.txt
nohup.txt
7_BASALT.txt
image

@EMBL-PKU
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EMBL-PKU commented Jun 8, 2024

Could you please check is there any bin present under the folder of 'BestBbinset_outlier_refined_filtrated'?

@1023011930
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Sure,I have checked it. And here is my result!
cd BestBinset_outlier_refined_filtrated
微信截图_20240609100157

@1023011930
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It looks like the previous bin was unable to get into the "BestBinset_outlier_refined_filtrated_retrieved" folder, causing the next checkm to report the error "ERROR: No Check the extension (-x) used to identify bins.
" which eventually caused the programme to stop

@EMBL-PKU
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Thank you. It looks like there was no bin containing in retrieval binset folder. I will correct the error in the following a couple of days. Thank you for finding this error!

@1023011930
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Dear Mr Yu, thank you for your work and I hope your research gets better and better!

@RekValT
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RekValT commented Jul 15, 2024

I'm running into the same issue, is there any workaround?
Thank you.

@yinyueling
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Yes,I also meet the same issue with running BASILT.sif from 微云.
Uploading 截屏2024-07-31 16.01.02.png…

@bio-unach
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I have the same issue. Could this be the version? How can I check what version I have installed?

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5 participants