articles.bib

@article{berger2008variation,
  title={{Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences}},
  author={Berger, Michael F and Badis, Gwenael and Gehrke, Andrew R and Talukder, Shaheynoor and Philippakis, Anthony A and Pena-Castillo, Lourdes and Alleyne, Trevis M and Mnaimneh, Sanie and Botvinnik, Olga B and Chan, Esther T and others},
  journal={Cell},
  volume={133},
  number={7},
  pages={1266--1276},
  year={2008},
  publisher={Elsevier}
}

@article{wood2012microscale,
  title={{MicroSCALE screening reveals genetic modifiers of therapeutic response in melanoma}},
  author={Wood, Kris C and Konieczkowski, David J and Johannessen, Cory M and Boehm, Jesse S and Tamayo, Pablo and Botvinnik, Olga B and Mesirov, Jill P and Hahn, William C and Root, David E and Garraway, Levi A and others},
  journal={Science Signaling},
  volume={5},
  number={224},
  pages={rs4},
  year={2012},
  publisher={NIH Public Access}
}

@article{galili2012prediction,
  title={Prediction of response to therapy with ezatiostat in lower risk myelodysplastic syndrome},
  author={Galili, Naomi and Tamayo, Pablo and Botvinnik, Olga B and Mesirov, Jill P and Brooks, Margarita R and Brown, Gail and Raza, Azra},
  journal={Journal of Hematology \& Oncology},
  volume={5},
  number={1},
  pages={1},
  year={2012},
  publisher={BioMed Central}
}

@article{galili2011gene,
  title={{Gene Expression Studies May Identify Lower Risk Myelodysplastic Syndrome Patients Likely to Respond to Therapy with Ezatiostat Hydrochloride (TLK199)}},
  author={Galili, Naomi and Tamayo, Pablo and Botvinnik, Olga B and Mesirov, Jill P and Zikria, Jennifer and Brown, Gail and Raza, Azra},
  journal={Blood},
  volume={118},
  number={21},
  pages={2779--2779},
  year={2011},
  publisher={American Society of Hematology}
}

@article{kim2016characterizing,
  title={Characterizing genomic alterations in cancer by complementary functional associations},
  author={Kim*, Jong Wook and Botvinnik*, Olga B and Abudayyeh, Omar and Birger, Chet and Rosenbluh, Joseph and Shrestha, Yashaswi and Abazeed, Mohamed E and Hammerman, Peter S and DiCara, Daniel and Konieczkowski, David J and others},
  journal={Nature Biotechnology},
  year={2016},
  publisher={Nature Publishing Group},
  note={* These authors contributed equally to this work}
}

@article{song2017,
  title={Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation},
  author={Song*, Yan and Botvinnik*, Olga B and Lovci, Michael T and Kakaradov, Boyko and Liu, Patrick and Xu, Jia L and Yeo, Gene},
  journal={Molecular Cell},
  year={2017},
  publisher={Nature Publishing Group},
  note={* These authors contributed equally to this work}
}


%% Created using Papers on Mon, 26 Dec 2016.
%% http://papersapp.com/papers/

@article{Nutter:2016fd,
author = {Nutter, Curtis A and Jaworski, Elizabeth A and Verma, Sunil K and Deshmukh, Vaibhav and Wang, Qiongling and Botvinnik, Olga B and Lozano, Mario J and Abass, Ismail J and Ijaz, Talha and Brasier, Allan R and Garg, Nisha J and Wehrens, Xander H T and Yeo, Gene W and Kuyumcu-Martinez, Muge N},
title = {{Dysregulation of RBFOX2 Is an Early Event in Cardiac Pathogenesis of Diabetes}},
journal = {Cell Reports},
year = {2016},
volume = {15},
number = {10},
pages = {2200--2213},
doi = {10.1016/j.celrep.2016.05.002},
language = {English},
rating = {0},
date-added = {2016-12-26T22:41:36GMT},
date-modified = {2016-12-26T22:43:33GMT},
url = {http://linkinghub.elsevier.com/retrieve/pii/S2211124716305551},
local-url = {file://localhost/Users/olga/Documents/Library.papers3/Articles/2016/Nutter/Cell%20Reports%202016%20Nutter.pdf},
file = {{Cell Reports 2016 Nutter.pdf:/Users/olga/Documents/Library.papers3/Articles/2016/Nutter/Cell Reports 2016 Nutter.pdf:application/pdf;Cell Reports 2016 Nutter.pdf:/Users/olga/Documents/Library.papers3/Articles/2016/Nutter/Cell Reports 2016 Nutter.pdf:application/pdf}},
uri = {\url{papers3://publication/doi/10.1016/j.celrep.2016.05.002}}
}

@article{Goncearenco:2012eha,
author = {Goncearenco, A and Grynberg, P and Botvinnik, Olga B and Macintyre, Geoff and Abeel, Thomas},
title = {{Highlights from the Eighth International Society for Computational Biology (ISCB) Student Council Symposium 2012}},
journal = {BMC Bioinformatics},
year = {2012},
doi = {10.1186/1471-2105-13-S18-A1},
read = {Yes},
rating = {0},
date-added = {2016-12-26T22:41:19GMT},
date-modified = {2016-12-26T22:45:51GMT},
abstract = {... BMC Bioinformatics201213(Suppl 18):A1. DOI: 10.1186 / 1471 - 2105 - 13 - S18 - A1 . {\textcopyright} Goncearenco et al; licensee BioMed Central Ltd. 2012. Published: 14 December 2012. Abstract. The report summarizes the scientific content of ...
},
url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-S18-A1},
local-url = {file://localhost/Users/olga/Documents/Library.papers3/Articles/2012/Goncearenco/2012%20Goncearenco.pdf},
file = {{2012 Goncearenco.pdf:/Users/olga/Documents/Library.papers3/Articles/2012/Goncearenco/2012 Goncearenco.pdf:application/pdf}},
uri = {\url{papers3://publication/doi/10.1186/1471-2105-13-S18-A1}}
}

@article{TabulaMuris:2018gj,
author = {{Tabula Muris Consortium}},
title = {{Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris}},
journal = {Nature},
year = {2018},
pages = {1--25},
month = oct,
URL = {https://www.nature.com/articles/s41586-018-0590-4},
eprint = {https://www.biorxiv.org/content/early/2017/12/20/237446.full.pdf}
}