From 9f1087c906f78e8bdace18ea628f3c530c2c67b1 Mon Sep 17 00:00:00 2001
From: Peter Krusche <pkrusche@gmail.com>
Date: Thu, 26 Nov 2015 08:19:51 +0000
Subject: [PATCH] HAP-137 fix unit test gt ordering for #1

---
 .ycm_extra_conf.py                | 2 ++
 src/c++/test/test_allelesplit.cpp | 2 ++
 2 files changed, 4 insertions(+)

diff --git a/.ycm_extra_conf.py b/.ycm_extra_conf.py
index 571bed0..f829cd6 100644
--- a/.ycm_extra_conf.py
+++ b/.ycm_extra_conf.py
@@ -55,6 +55,8 @@
 '-I',
 'external/intervaltree',
 '-I',
+'external/boost_install/include',
+'-I',
 '/illumina/thirdparty/boost/boost_1_55_0_python2.4/include',
 '-I',
 '/opt/boost_1_55_0/include',
diff --git a/src/c++/test/test_allelesplit.cpp b/src/c++/test/test_allelesplit.cpp
index 6304ad3..e0d1d10 100644
--- a/src/c++/test/test_allelesplit.cpp
+++ b/src/c++/test/test_allelesplit.cpp
@@ -191,6 +191,8 @@ BOOST_AUTO_TEST_CASE(testVariantPrimitiveSplitter)
             std::ostringstream oss;
             oss << v;
             std::string res = stringutil::replaceAll(oss.str(), "1/0", "0/1");
+            res = stringutil::replaceAll(res, "2/0", "0/2");
+            res = stringutil::replaceAll(res, "2/1", "1/2");
             if(!expected_vars[v.pos].count(res))
             {
                 std::cerr << "Unexpected variant calls: " << v << "\n";