From d8a6b06d70a16fc21d3f1b8233ef756a1a959b4c Mon Sep 17 00:00:00 2001
From: dsheng1026 <di.sheng@pnnl.gov>
Date: Sun, 12 Jan 2025 18:57:05 -0500
Subject: [PATCH] update the github site

---
 docs/articles/HELPS-vignette.html | 10 +++++-----
 docs/index.html                   | 10 ++++++----
 docs/pkgdown.yml                  |  2 +-
 3 files changed, 12 insertions(+), 10 deletions(-)

diff --git a/docs/articles/HELPS-vignette.html b/docs/articles/HELPS-vignette.html
index 7697e02..5dde621 100644
--- a/docs/articles/HELPS-vignette.html
+++ b/docs/articles/HELPS-vignette.html
@@ -132,7 +132,7 @@ <h3 id="step1-1-calculate-daily-gridded-heat-stress">Step1.1: calculate daily gr
 <span>                    <span class="st">"../HELPS_Example_Data/hurs_example_day.nc"</span>,</span>
 <span>                    <span class="st">"../HELPS_Example_Data/tas_example_day.nc"</span>,</span>
 <span>                    <span class="st">"../HELPS_Example_Data/ps_example_day.nc"</span><span class="op">)</span></span>
-<span><span class="co">#&gt; |---------|---------|---------|---------|=========================================                                          |---------|---------|---------|---------|=========================================                                          </span></span>
+<span><span class="co">#&gt; |---------|---------|---------|---------|=========================================                                          |---------|---------|---------|---------|=========================================                                          |---------|---------|---------|---------|=========================================                                          </span></span>
 <span><span class="va">wbgt.sun.day</span></span>
 <span><span class="co">#&gt; class      : RasterStack </span></span>
 <span><span class="co">#&gt; dimensions : 360, 720, 259200, 366  (nrow, ncol, ncell, nlayers)</span></span>
@@ -412,7 +412,7 @@ <h3 id="step2-2-calculate-daily-gridded-physical-work-capacity">Step2.2: calcula
 <span><span class="va">pwc.mon.foster</span> <span class="op">&lt;-</span> <span class="fu"><a href="../reference/PWC.html">PWC</a></span><span class="op">(</span>WBGT <span class="op">=</span> <span class="va">esi.mon</span>,  LHR <span class="op">=</span> <span class="va">LHR_Foster</span>, workload <span class="op">=</span> <span class="st">"high"</span><span class="op">)</span></span>
 <span><span class="va">end_t</span> <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.time</a></span><span class="op">(</span><span class="op">)</span></span>
 <span><span class="va">end_t</span> <span class="op">-</span> <span class="va">start_t</span></span>
-<span><span class="co">#&gt; Time difference of 26.40551 secs</span></span>
+<span><span class="co">#&gt; Time difference of 12.37046 secs</span></span>
 <span><span class="va">pwc.mon.foster</span></span>
 <span><span class="co">#&gt; class      : RasterStack </span></span>
 <span><span class="co">#&gt; dimensions : 360, 720, 259200, 12  (nrow, ncol, ncell, nlayers)</span></span>
@@ -427,7 +427,7 @@ <h3 id="step2-2-calculate-daily-gridded-physical-work-capacity">Step2.2: calcula
 <span><span class="va">pwc.mon.hothaps</span> <span class="op">&lt;-</span> <span class="fu"><a href="../reference/PWC.html">PWC</a></span><span class="op">(</span>WBGT <span class="op">=</span> <span class="va">esi.mon</span>,  LHR <span class="op">=</span> <span class="va">LHR_Hothaps</span>, workload <span class="op">=</span> <span class="st">"high"</span><span class="op">)</span></span>
 <span><span class="va">end_t</span> <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.time</a></span><span class="op">(</span><span class="op">)</span></span>
 <span><span class="va">end_t</span> <span class="op">-</span> <span class="va">start_t</span></span>
-<span><span class="co">#&gt; Time difference of 1.814757 secs</span></span>
+<span><span class="co">#&gt; Time difference of 0.8347061 secs</span></span>
 <span><span class="va">pwc.mon.hothaps</span></span>
 <span><span class="co">#&gt; class      : RasterStack </span></span>
 <span><span class="co">#&gt; dimensions : 360, 720, 259200, 12  (nrow, ncol, ncell, nlayers)</span></span>
@@ -442,7 +442,7 @@ <h3 id="step2-2-calculate-daily-gridded-physical-work-capacity">Step2.2: calcula
 <span><span class="va">pwc.mon.niosh</span> <span class="op">&lt;-</span> <span class="fu"><a href="../reference/PWC.html">PWC</a></span><span class="op">(</span>WBGT <span class="op">=</span> <span class="va">esi.mon</span>,  LHR <span class="op">=</span> <span class="va">LHR_NIOSH</span>, workload <span class="op">=</span> <span class="st">"high"</span><span class="op">)</span></span>
 <span><span class="va">end_t</span> <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.time</a></span><span class="op">(</span><span class="op">)</span></span>
 <span><span class="va">end_t</span> <span class="op">-</span> <span class="va">start_t</span></span>
-<span><span class="co">#&gt; Time difference of 37.99287 secs</span></span>
+<span><span class="co">#&gt; Time difference of 17.88027 secs</span></span>
 <span><span class="va">pwc.mon.niosh</span></span>
 <span><span class="co">#&gt; class      : RasterStack </span></span>
 <span><span class="co">#&gt; dimensions : 360, 720, 259200, 12  (nrow, ncol, ncell, nlayers)</span></span>
@@ -457,7 +457,7 @@ <h3 id="step2-2-calculate-daily-gridded-physical-work-capacity">Step2.2: calcula
 <span><span class="va">pwc.mon.iso</span> <span class="op">&lt;-</span> <span class="fu"><a href="../reference/PWC.html">PWC</a></span><span class="op">(</span>WBGT <span class="op">=</span> <span class="va">esi.mon</span>,  LHR <span class="op">=</span> <span class="va">LHR_ISO</span>, workload <span class="op">=</span> <span class="st">"high"</span><span class="op">)</span></span>
 <span><span class="va">end_t</span> <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.time</a></span><span class="op">(</span><span class="op">)</span></span>
 <span><span class="va">end_t</span> <span class="op">-</span> <span class="va">start_t</span></span>
-<span><span class="co">#&gt; Time difference of 26.48418 secs</span></span>
+<span><span class="co">#&gt; Time difference of 17.84502 secs</span></span>
 <span><span class="va">pwc.mon.iso</span></span>
 <span><span class="co">#&gt; class      : RasterStack </span></span>
 <span><span class="co">#&gt; dimensions : 360, 720, 259200, 12  (nrow, ncol, ncell, nlayers)</span></span>
diff --git a/docs/index.html b/docs/index.html
index 9e43787..4f97671 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -100,8 +100,10 @@ <h1 id="key-links">
 <!-------------------------->
 <!-------------------------->
 <ul>
-<li>Github: insert the github page</li>
-<li>Webpage: insert the io page</li>
+<li>Github: <a href="https://github.com/dsheng1026/HELPS" class="external-link uri">https://github.com/dsheng1026/HELPS</a>
+</li>
+<li>Webpage: <a href="https://dsheng1026.github.io/HELPS/" class="external-link uri">https://dsheng1026.github.io/HELPS/</a>
+</li>
 </ul>
 <p><a href="#Contents">Back to Contents</a></p>
 <p><br></p>
@@ -148,7 +150,7 @@ <h1 id="installation-guides">
 <li><p>Open R studio:</p></li>
 </ol>
 <pre><code><span><span class="fu"><a href="https://rdrr.io/r/utils/install.packages.html" class="external-link">install.packages</a></span><span class="op">(</span><span class="st">'devtools'</span><span class="op">)</span></span>
-<span><span class="fu">devtools</span><span class="fu">::</span><span class="fu"><a href="https://remotes.r-lib.org/reference/install_github.html" class="external-link">install_github</a></span><span class="op">(</span><span class="st">'JGCRI/HELPS'</span><span class="op">)</span></span></code></pre>
+<span><span class="fu">devtools</span><span class="fu">::</span><span class="fu"><a href="https://remotes.r-lib.org/reference/install_github.html" class="external-link">install_github</a></span><span class="op">(</span><span class="st">'dsheng1026/HELPS'</span><span class="op">)</span></span></code></pre>
 <p><a href="#Contents">Back to Contents</a></p>
 <p><br></p>
 <!-------------------------->
@@ -161,7 +163,7 @@ <h1 id="how-to-guides">
 <!-------------------------->
 <!-------------------------->
 <ul>
-<li>[Package vignette]((insert a link)</li>
+<li><a href="https://dsheng1026.github.io/HELPS/articles/HELPS-vignette.html" class="external-link">Package vignette</a></li>
 </ul>
 <p><a href="#Contents">Back to Contents</a></p>
 <p><br></p>
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
index d635d1c..8d7e867 100644
--- a/docs/pkgdown.yml
+++ b/docs/pkgdown.yml
@@ -3,4 +3,4 @@ pkgdown: 2.1.1
 pkgdown_sha: ~
 articles:
   HELPS-vignette: HELPS-vignette.html
-last_built: 2025-01-12T23:16Z
+last_built: 2025-01-12T23:50Z