pyproject.toml

[build-system]
# cuvec>=2.8.0
requires = ["setuptools>=42", "wheel", "setuptools_scm[toml]>=3.4",
            "ninst>=0.12.0", "cuvec-base", "miutil[cuda]>=0.4.0",
            "scikit-build>=0.11.0", "cmake>=3.18", "ninja"]
build-backend = "setuptools.build_meta"

[tool.setuptools_scm]
write_to = "niftypet/nimpa/_dist_ver.py"
write_to_template = "__version__ = '{version}'\n"

[project.urls]
documentation = "https://niftypet.readthedocs.io"
repository = "https://github.com/NiftyPET/NIMPA"
changelog = "https://github.com/NiftyPET/NIMPA/releases"

[project]
name = "nimpa"
dynamic = ["version", "dependencies"]
authors = [{name = "Pawel Markiewicz", email = "p.markiewicz@ucl.ac.uk"}]
maintainers = [{name = "Casper da Costa-Luis", email = "casper.dcl@physics.org"}]
description = "CUDA-accelerated Python utilities for high-throughput neuroimage processing and analysis"
readme = "README.rst"
requires-python = ">=3.7"
keywords = ["PET", "MR", "processing", "analysis"]
license = {text = "Apache-2.0"}
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Environment :: GPU",
    "Environment :: GPU :: NVIDIA CUDA",
    "Intended Audience :: Education",
    "Intended Audience :: Healthcare Industry",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: Apache Software License",
    "Operating System :: Microsoft :: Windows",
    "Operating System :: POSIX :: Linux",
    "Programming Language :: C",
    "Programming Language :: C++",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.7",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3 :: Only",
    "Topic :: Scientific/Engineering :: Medical Science Apps."]

[project.optional-dependencies]
dev = ["pytest>=6", "pytest-cov", "pytest-timeout", "pytest-xdist"]
plot = ["miutil[plot]"]
cuda = ["cuvec>=2.3.1", "numcu"]
dcm2niix = ["dcm2niix>=1.0.20220116"]
niftyreg = ["niftyreg"]

[tool.flake8]
max_line_length = 99
extend_ignore = ["E228", "E261", "E701", "P101", "P103"]
exclude = [".git", "__pycache__", "build", "dist", ".eggs"]

[tool.yapf]
spaces_before_comment = [15, 20]
arithmetic_precedence_indication = true
allow_split_before_dict_value = false
coalesce_brackets = true
column_limit = 99
each_dict_entry_on_separate_line = false
space_between_ending_comma_and_closing_bracket = false
split_before_named_assigns = false
split_before_closing_bracket = false
blank_line_before_nested_class_or_def = false

[tool.isort]
profile = "black"
line_length = 99
known_first_party = ["niftypet", "tests"]

[tool.pytest.ini_options]
minversion = "6.0"
timeout = 300
log_level = "INFO"
python_files = ["tests/test_*.py"]
testpaths = ["tests"]
addopts = "-v --tb=short -rxs -W=error -n=auto --durations=0 --durations-min=2 --cov=niftypet --cov-report=term-missing --cov-report=xml"