pyproject.toml

[build-system]
requires = ["setuptools>=42.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "cellplm"
version = "0.1.0"
authors = [
  { name="Hongzhi Wen", email="wenhongz@msu.edu" },
]
description = "Package of CellPLM: A pretrain-ed cell language model beyond single cells. Paper link: https://www.biorxiv.org/content/10.1101/2023.10.03.560734"
readme = "README.md"
requires-python = ">=3.9"
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: BSD License",
    "Operating System :: OS Independent",
    "Intended Audience :: Science/Research",
]
dependencies = [
    'pydance',
    'einops',
    'torchmetrics',
    'hdf5plugin',
    'mygene',
]

[project.optional-dependencies]
rapids = [
    'rapids-singlecell',
]

[project.urls]
Homepage = "https://github.com/OmicsML/CellPLM"
Issues = "https://github.com/OmicsML/CellPLM/issues"

[tool.setuptools]
packages = ['CellPLM']