From 244736647d9807d735848d5f4b24210943cf5ca2 Mon Sep 17 00:00:00 2001 From: "Michael R. Crusoe" Date: Sat, 15 Oct 2016 02:56:36 -0700 Subject: [PATCH] Adjust POD to produce better manual pages From Pod::Checker: The NAME section ("=head1 NAME") should consist of a single paragraph with the script/module name, followed by a dash `-' and a very short description of what the thing is good for. --- convert-sam-for-rsem | 6 +----- rsem-calculate-expression | 6 +----- rsem-control-fdr | 6 +----- rsem-generate-ngvector | 6 +----- rsem-plot-transcript-wiggles | 6 +----- rsem-prepare-reference | 6 +----- rsem-run-ebseq | 6 +----- 7 files changed, 7 insertions(+), 35 deletions(-) diff --git a/convert-sam-for-rsem b/convert-sam-for-rsem index 2a3256e..1354cc3 100755 --- a/convert-sam-for-rsem +++ b/convert-sam-for-rsem @@ -56,11 +56,7 @@ __END__ =head1 NAME -convert-sam-for-rsem - -=head1 PURPOSE - -Make a RSEM compatible BAM file. +convert-sam-for-rsem - Make a RSEM compatible BAM file. =head1 SYNOPSIS diff --git a/rsem-calculate-expression b/rsem-calculate-expression index b58a762..1c39831 100755 --- a/rsem-calculate-expression +++ b/rsem-calculate-expression @@ -774,11 +774,7 @@ __END__ =head1 NAME -rsem-calculate-expression - -=head1 PURPOSE - -Estimate gene and isoform expression from RNA-Seq data. +rsem-calculate-expression - Estimate gene and isoform expression from RNA-Seq data. =head1 SYNOPSIS diff --git a/rsem-control-fdr b/rsem-control-fdr index 89cfa66..6736aaf 100755 --- a/rsem-control-fdr +++ b/rsem-control-fdr @@ -62,11 +62,7 @@ __END__ =head1 NAME -rsem-control-fdr - -=head1 PURPOSE - -Filter EBSeq output for statistical significance. +rsem-control-fdr - Filter EBSeq output for statistical significance. =head1 SYNOPSIS diff --git a/rsem-generate-ngvector b/rsem-generate-ngvector index 0999e08..4eac284 100755 --- a/rsem-generate-ngvector +++ b/rsem-generate-ngvector @@ -33,11 +33,7 @@ __END__ =head1 NAME -rsem-generate-ngvector - -=head1 PURPOSE - -Create Ng vector for EBSeq based only on transcript sequences. +rsem-generate-ngvector - Create Ng vector for EBSeq based only on transcript sequences. =head1 SYNOPSIS diff --git a/rsem-plot-transcript-wiggles b/rsem-plot-transcript-wiggles index ea9a37c..f527709 100755 --- a/rsem-plot-transcript-wiggles +++ b/rsem-plot-transcript-wiggles @@ -81,11 +81,7 @@ __END__ =head1 NAME -rsem-plot-transcript-wiggles - -=head1 PURPOSE - -Generate PDF wiggle plots from transcript or gene ids +rsem-plot-transcript-wiggles - Generate PDF wiggle plots from transcript or gene ids =head1 SYNOPSIS diff --git a/rsem-prepare-reference b/rsem-prepare-reference index 4a23d2f..d6c651c 100755 --- a/rsem-prepare-reference +++ b/rsem-prepare-reference @@ -219,11 +219,7 @@ __END__ =head1 NAME -rsem-prepare-reference - -=head1 PURPOSE - -Prepare transcript references for RSEM and optionally build BOWTIE/BOWTIE2/STAR indices. +rsem-prepare-reference - Prepare transcript references for RSEM and optionally build BOWTIE/BOWTIE2/STAR indices. =head1 SYNOPSIS diff --git a/rsem-run-ebseq b/rsem-run-ebseq index 64e6689..485600a 100755 --- a/rsem-run-ebseq +++ b/rsem-run-ebseq @@ -38,11 +38,7 @@ __END__ =head1 NAME -rsem-run-ebseq - -=head1 PURPOSE - -Wrapper for EBSeq to perform differential expression analysis. +rsem-run-ebseq - Wrapper for EBSeq to perform differential expression analysis. =head1 SYNOPSIS