From 26e27bfc05ee03ba8434516ca8fd0ee71d89389f Mon Sep 17 00:00:00 2001 From: oganm Date: Sat, 4 May 2024 02:29:19 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20Pavlidis?= =?UTF-8?q?Lab/gemma.R@6567fb7a8e955b2502f4821d8d51a6a3e93aff5c=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 404.html | 2 +- LICENSE.html | 2 +- articles/gemma.R.html | 12 ++++----- .../gemma.R_files/figure-html/diffExpr-1.png | Bin 134263 -> 134124 bytes articles/index.html | 2 +- articles/metadata.html | 4 +-- articles/metanalysis.html | 24 +++++++++--------- .../figure-html/unnamed-chunk-21-1.png | Bin 161637 -> 161614 bytes authors.html | 2 +- index.html | 2 +- news/index.html | 2 +- pkgdown.yml | 2 +- reference/accessField.html | 2 +- reference/blank_processor.html | 2 +- reference/checkBounds.html | 2 +- reference/dot-getResultSets.html | 2 +- reference/encode.html | 2 +- reference/filter_properties.html | 2 +- reference/forget_gemma_memoised.html | 2 +- reference/gemma.R.html | 2 +- reference/gemmaCache.html | 2 +- reference/gemmaPath.html | 2 +- reference/gemma_call.html | 2 +- reference/gemma_kable.html | 2 +- reference/gemma_memoise.html | 2 +- reference/get_all_pages.html | 2 +- reference/get_child_terms.html | 2 +- reference/get_dataset_annotations.html | 2 +- reference/get_dataset_design.html | 2 +- ...aset_differential_expression_analyses.html | 2 +- reference/get_dataset_expression.html | 2 +- .../get_dataset_expression_for_genes.html | 4 +-- reference/get_dataset_object.html | 2 +- reference/get_dataset_platforms.html | 2 +- .../get_dataset_processed_expression.html | 2 +- reference/get_dataset_quantitation_types.html | 2 +- reference/get_dataset_raw_expression.html | 2 +- reference/get_dataset_samples.html | 2 +- reference/get_datasets.html | 2 +- reference/get_datasets_by_ids.html | 2 +- .../get_differential_expression_values.html | 2 +- reference/get_gene_go_terms.html | 2 +- reference/get_gene_locations.html | 2 +- reference/get_gene_probes.html | 2 +- reference/get_genes.html | 2 +- reference/get_platform_annotations.html | 2 +- reference/get_platform_datasets.html | 2 +- reference/get_platform_element_genes.html | 2 +- reference/get_platforms_by_ids.html | 2 +- reference/get_result_sets.html | 2 +- reference/get_taxa.html | 2 +- reference/get_taxa_by_ids.html | 2 +- reference/get_taxon_datasets.html | 2 +- reference/index.html | 2 +- reference/isEmpty.html | 2 +- reference/make_design.html | 2 +- reference/memoise.html | 2 +- reference/nullCheck.html | 2 +- reference/processAnnotations.html | 2 +- .../processCharacteristicValueObject.html | 2 +- reference/processDEA.html | 2 +- reference/processDEMatrix.html | 2 +- reference/processDEcontrasts.html | 2 +- reference/processDatasetResultSets.html | 2 +- reference/processDatasets.html | 2 +- reference/processDesignMatrix.html | 2 +- ...xpressionAnalysisResultSetValueObject.html | 2 +- reference/processElements.html | 2 +- reference/processExpressionMatrix.html | 2 +- reference/processFile.html | 2 +- reference/processGO.html | 2 +- reference/processGemmaArray.html | 2 +- reference/processGeneLocation.html | 2 +- reference/processGenes.html | 2 +- reference/processPlatforms.html | 2 +- .../processQuantitationTypeValueObject.html | 2 +- reference/processResultSetFactors.html | 2 +- reference/processSamples.html | 2 +- reference/processSearchAnnotations.html | 2 +- reference/processTaxon.html | 2 +- reference/process_search.html | 2 +- reference/search_annotations.html | 2 +- reference/search_datasets.html | 2 +- reference/search_gemma.html | 2 +- reference/setGemmaPath.html | 2 +- reference/set_gemma_user.html | 2 +- reference/subset_factorValues.html | 2 +- reference/update_result.html | 2 +- reference/validateBoolean.html | 2 +- reference/validateID.html | 2 +- reference/validateLimit.html | 2 +- reference/validateOptionalID.html | 2 +- reference/validateOptionalQuery.html | 2 +- reference/validateOptionalTaxon.html | 2 +- reference/validatePositiveInteger.html | 2 +- reference/validateQuery.html | 2 +- reference/validateResultType.html | 2 +- reference/validateSingleID.html | 2 +- reference/validateSort.html | 2 +- reference/validateTaxa.html | 2 +- reference/validateTaxon.html | 2 +- 101 files changed, 117 insertions(+), 117 deletions(-) diff --git a/404.html b/404.html index d2940204..ef61fbe6 100644 --- a/404.html +++ b/404.html @@ -45,7 +45,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/LICENSE.html b/LICENSE.html index ab3b34e1..4d16a8fc 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/articles/gemma.R.html b/articles/gemma.R.html index b5f712d6..568a2792 100644 --- a/articles/gemma.R.html +++ b/articles/gemma.R.html @@ -46,7 +46,7 @@ gemma.R - 3.1.1 + 3.1.2 @@ -1219,10 +1219,10 @@

Searching for datasets of i NA -bipolar neuron +bipolar affective disorder -http://purl.obolibrary…/CL_0000103 +http://purl.obolibrary…/HP_0007302 @@ -1233,10 +1233,10 @@

Searching for datasets of i NA -bipolar affective disorder +bipolar neuron -http://purl.obolibrary…/HP_0007302 +http://purl.obolibrary…/CL_0000103 @@ -3936,7 +3936,7 @@

Session info gemma.R - 3.1.1 + 3.1.2 diff --git a/articles/metadata.html b/articles/metadata.html index f2a31f0a..0acbba2d 100644 --- a/articles/metadata.html +++ b/articles/metadata.html @@ -46,7 +46,7 @@ gemma.R - 3.1.1 + 3.1.2 @@ -2099,7 +2099,7 @@

Session info## [1] stats graphics grDevices utils datasets methods base ## ## other attached packages: -## [1] purrr_1.0.2 pheatmap_1.0.12 dplyr_1.1.4 gemma.R_3.1.1 +## [1] purrr_1.0.2 pheatmap_1.0.12 dplyr_1.1.4 gemma.R_3.1.2 ## [5] BiocStyle_2.32.0 ## ## loaded via a namespace (and not attached): diff --git a/articles/metanalysis.html b/articles/metanalysis.html index 879b3b05..32d4a7f6 100644 --- a/articles/metanalysis.html +++ b/articles/metanalysis.html @@ -46,7 +46,7 @@ gemma.R - 3.1.1 + 3.1.2 @@ -176,10 +176,10 @@

Identifying what to search for -atypical juvenile parkinsonism +wolff-parkinson-white syndrome -http://purl.obolibrary…/MONDO_0018321 +http://purl.obolibrary…/HP_0001716 @@ -190,10 +190,10 @@

Identifying what to search for -parkinsonism with polyneuro… +parkinsonism with favorable… -http://purl.obolibrary…/MONDO_0036193 +http://purl.obolibrary…/HP_0002548 @@ -204,10 +204,10 @@

Identifying what to search for -parkinsonism-dystonia, infa… +parkinsonism -http://purl.obolibrary…/MONDO_0013150 +http://purl.obolibrary…/HP_0001300 @@ -218,10 +218,10 @@

Identifying what to search for -young-onset parkinson disease +atypical juvenile parkinsonism -http://purl.obolibrary…/MONDO_0017279 +http://purl.obolibrary…/MONDO_0018321 @@ -232,10 +232,10 @@

Identifying what to search for -early-onset parkinsonism - … +parkinsonism with polyneuro… -http://www.orpha…/Orphanet_2379 +http://purl.obolibrary…/MONDO_0036193 @@ -939,7 +939,7 @@

Session info gemma.R - 3.1.1 + 3.1.2 diff --git a/index.html b/index.html index 511e5a88..796b52d5 100644 --- a/index.html +++ b/index.html @@ -46,7 +46,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/news/index.html b/news/index.html index f352e0d2..aed0d9c6 100644 --- a/news/index.html +++ b/news/index.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/pkgdown.yml b/pkgdown.yml index 51b7d88a..afad911e 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -5,5 +5,5 @@ articles: gemma.R: gemma.R.html metadata: metadata.html metanalysis: metanalysis.html -last_built: 2024-05-04T02:24Z +last_built: 2024-05-04T02:25Z diff --git a/reference/accessField.html b/reference/accessField.html index 6400d0c8..6557e89b 100644 --- a/reference/accessField.html +++ b/reference/accessField.html @@ -24,7 +24,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/blank_processor.html b/reference/blank_processor.html index 8f85058c..e91e43e5 100644 --- a/reference/blank_processor.html +++ b/reference/blank_processor.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/checkBounds.html b/reference/checkBounds.html index ef3f129a..43a89953 100644 --- a/reference/checkBounds.html +++ b/reference/checkBounds.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/dot-getResultSets.html b/reference/dot-getResultSets.html index 8585283d..a8a5a99e 100644 --- a/reference/dot-getResultSets.html +++ b/reference/dot-getResultSets.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/encode.html b/reference/encode.html index edb999be..afe360e5 100644 --- a/reference/encode.html +++ b/reference/encode.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/filter_properties.html b/reference/filter_properties.html index 048b0f93..8ec07582 100644 --- a/reference/filter_properties.html +++ b/reference/filter_properties.html @@ -25,7 +25,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/forget_gemma_memoised.html b/reference/forget_gemma_memoised.html index e8284144..b25cc4a9 100644 --- a/reference/forget_gemma_memoised.html +++ b/reference/forget_gemma_memoised.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/gemma.R.html b/reference/gemma.R.html index b6003c03..a2ce3193 100644 --- a/reference/gemma.R.html +++ b/reference/gemma.R.html @@ -27,7 +27,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/gemmaCache.html b/reference/gemmaCache.html index d77e86b7..108538ac 100644 --- a/reference/gemmaCache.html +++ b/reference/gemmaCache.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/gemmaPath.html b/reference/gemmaPath.html index f2ea9df2..bfee2f9f 100644 --- a/reference/gemmaPath.html +++ b/reference/gemmaPath.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/gemma_call.html b/reference/gemma_call.html index e03b3b01..0a6c5f4e 100644 --- a/reference/gemma_call.html +++ b/reference/gemma_call.html @@ -25,7 +25,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/gemma_kable.html b/reference/gemma_kable.html index e41037e1..ad3cd5cf 100644 --- a/reference/gemma_kable.html +++ b/reference/gemma_kable.html @@ -24,7 +24,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/gemma_memoise.html b/reference/gemma_memoise.html index 27319731..54a74c31 100644 --- a/reference/gemma_memoise.html +++ b/reference/gemma_memoise.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_all_pages.html b/reference/get_all_pages.html index f4c1eeee..92e26f9b 100644 --- a/reference/get_all_pages.html +++ b/reference/get_all_pages.html @@ -24,7 +24,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_child_terms.html b/reference/get_child_terms.html index 314d46e7..c7bf6dd9 100644 --- a/reference/get_child_terms.html +++ b/reference/get_child_terms.html @@ -26,7 +26,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_dataset_annotations.html b/reference/get_dataset_annotations.html index af315f2f..0b3fb8ea 100644 --- a/reference/get_dataset_annotations.html +++ b/reference/get_dataset_annotations.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_dataset_design.html b/reference/get_dataset_design.html index 4ad39537..ae3357be 100644 --- a/reference/get_dataset_design.html +++ b/reference/get_dataset_design.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_dataset_differential_expression_analyses.html b/reference/get_dataset_differential_expression_analyses.html index 4a32b03b..a7b9c36e 100644 --- a/reference/get_dataset_differential_expression_analyses.html +++ b/reference/get_dataset_differential_expression_analyses.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_dataset_expression.html b/reference/get_dataset_expression.html index c22f190c..4194ee37 100644 --- a/reference/get_dataset_expression.html +++ b/reference/get_dataset_expression.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_dataset_expression_for_genes.html b/reference/get_dataset_expression_for_genes.html index 20d1d0dc..301216f0 100644 --- a/reference/get_dataset_expression_for_genes.html +++ b/reference/get_dataset_expression_for_genes.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 @@ -172,7 +172,7 @@

Examples

#> attr(,"call") #> [1] "https://gemma.msl.ubc.ca/rest/v2/datasets/GSE2018/expressions/genes/10225%2C2841?keepNonSpecific=false" #> attr(,"env") -#> <environment: 0x55bd03ce7260> +#> <environment: 0x5642d0ebdf10> diff --git a/reference/get_dataset_object.html b/reference/get_dataset_object.html index 818e0306..d188adcd 100644 --- a/reference/get_dataset_object.html +++ b/reference/get_dataset_object.html @@ -25,7 +25,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_dataset_platforms.html b/reference/get_dataset_platforms.html index 5c09b3b9..7b8d7341 100644 --- a/reference/get_dataset_platforms.html +++ b/reference/get_dataset_platforms.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_dataset_processed_expression.html b/reference/get_dataset_processed_expression.html index 8171de14..dac32a4a 100644 --- a/reference/get_dataset_processed_expression.html +++ b/reference/get_dataset_processed_expression.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_dataset_quantitation_types.html b/reference/get_dataset_quantitation_types.html index 6094e9c6..48947c10 100644 --- a/reference/get_dataset_quantitation_types.html +++ b/reference/get_dataset_quantitation_types.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_dataset_raw_expression.html b/reference/get_dataset_raw_expression.html index f967e3d0..e1aa497d 100644 --- a/reference/get_dataset_raw_expression.html +++ b/reference/get_dataset_raw_expression.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_dataset_samples.html b/reference/get_dataset_samples.html index 8ab8807d..066f7caf 100644 --- a/reference/get_dataset_samples.html +++ b/reference/get_dataset_samples.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_datasets.html b/reference/get_datasets.html index 00554979..ed215896 100644 --- a/reference/get_datasets.html +++ b/reference/get_datasets.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_datasets_by_ids.html b/reference/get_datasets_by_ids.html index 87b0c992..42f15861 100644 --- a/reference/get_datasets_by_ids.html +++ b/reference/get_datasets_by_ids.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_differential_expression_values.html b/reference/get_differential_expression_values.html index 7cf4c47e..7ff6fc83 100644 --- a/reference/get_differential_expression_values.html +++ b/reference/get_differential_expression_values.html @@ -25,7 +25,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_gene_go_terms.html b/reference/get_gene_go_terms.html index bd13eba1..73219ff5 100644 --- a/reference/get_gene_go_terms.html +++ b/reference/get_gene_go_terms.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_gene_locations.html b/reference/get_gene_locations.html index b03c50b2..e46a365c 100644 --- a/reference/get_gene_locations.html +++ b/reference/get_gene_locations.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_gene_probes.html b/reference/get_gene_probes.html index eac44b91..ea5ff501 100644 --- a/reference/get_gene_probes.html +++ b/reference/get_gene_probes.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_genes.html b/reference/get_genes.html index c2e6d2d4..004e0d2f 100644 --- a/reference/get_genes.html +++ b/reference/get_genes.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_platform_annotations.html b/reference/get_platform_annotations.html index 18cbb3b3..5d660ead 100644 --- a/reference/get_platform_annotations.html +++ b/reference/get_platform_annotations.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_platform_datasets.html b/reference/get_platform_datasets.html index b6dc8723..919cbc3b 100644 --- a/reference/get_platform_datasets.html +++ b/reference/get_platform_datasets.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_platform_element_genes.html b/reference/get_platform_element_genes.html index 41bd8c7b..39860f3d 100644 --- a/reference/get_platform_element_genes.html +++ b/reference/get_platform_element_genes.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_platforms_by_ids.html b/reference/get_platforms_by_ids.html index 86e87d9f..2513db88 100644 --- a/reference/get_platforms_by_ids.html +++ b/reference/get_platforms_by_ids.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_result_sets.html b/reference/get_result_sets.html index becc9bab..1b5fa4ee 100644 --- a/reference/get_result_sets.html +++ b/reference/get_result_sets.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_taxa.html b/reference/get_taxa.html index f37e6f29..82bf370d 100644 --- a/reference/get_taxa.html +++ b/reference/get_taxa.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_taxa_by_ids.html b/reference/get_taxa_by_ids.html index 79fe8c29..1d6f60e9 100644 --- a/reference/get_taxa_by_ids.html +++ b/reference/get_taxa_by_ids.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/get_taxon_datasets.html b/reference/get_taxon_datasets.html index a7d5210f..cf5d647d 100644 --- a/reference/get_taxon_datasets.html +++ b/reference/get_taxon_datasets.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/index.html b/reference/index.html index 2bd4e58b..901e88d7 100644 --- a/reference/index.html +++ b/reference/index.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/isEmpty.html b/reference/isEmpty.html index 69ed9de1..2ab60559 100644 --- a/reference/isEmpty.html +++ b/reference/isEmpty.html @@ -26,7 +26,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/make_design.html b/reference/make_design.html index de28f4f0..15719af1 100644 --- a/reference/make_design.html +++ b/reference/make_design.html @@ -24,7 +24,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/memoise.html b/reference/memoise.html index 0c25b0b7..a2ae2162 100644 --- a/reference/memoise.html +++ b/reference/memoise.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/nullCheck.html b/reference/nullCheck.html index 09c7ded9..f0d5f275 100644 --- a/reference/nullCheck.html +++ b/reference/nullCheck.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processAnnotations.html b/reference/processAnnotations.html index ae44d632..894fe2a3 100644 --- a/reference/processAnnotations.html +++ b/reference/processAnnotations.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processCharacteristicValueObject.html b/reference/processCharacteristicValueObject.html index d8708db2..7a58aa77 100644 --- a/reference/processCharacteristicValueObject.html +++ b/reference/processCharacteristicValueObject.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processDEA.html b/reference/processDEA.html index 614706c3..fefb9d0c 100644 --- a/reference/processDEA.html +++ b/reference/processDEA.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processDEMatrix.html b/reference/processDEMatrix.html index 198c5174..c438832b 100644 --- a/reference/processDEMatrix.html +++ b/reference/processDEMatrix.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processDEcontrasts.html b/reference/processDEcontrasts.html index cb7d5779..b79788af 100644 --- a/reference/processDEcontrasts.html +++ b/reference/processDEcontrasts.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processDatasetResultSets.html b/reference/processDatasetResultSets.html index 4fd3f2da..8ce51dff 100644 --- a/reference/processDatasetResultSets.html +++ b/reference/processDatasetResultSets.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processDatasets.html b/reference/processDatasets.html index 7337cab1..2a12f94b 100644 --- a/reference/processDatasets.html +++ b/reference/processDatasets.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processDesignMatrix.html b/reference/processDesignMatrix.html index a129adb3..31e16b30 100644 --- a/reference/processDesignMatrix.html +++ b/reference/processDesignMatrix.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processDifferentialExpressionAnalysisResultSetValueObject.html b/reference/processDifferentialExpressionAnalysisResultSetValueObject.html index 3b57c7ec..707a2a81 100644 --- a/reference/processDifferentialExpressionAnalysisResultSetValueObject.html +++ b/reference/processDifferentialExpressionAnalysisResultSetValueObject.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processElements.html b/reference/processElements.html index f14921d3..be5b3da3 100644 --- a/reference/processElements.html +++ b/reference/processElements.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processExpressionMatrix.html b/reference/processExpressionMatrix.html index 4884b572..2398c0e9 100644 --- a/reference/processExpressionMatrix.html +++ b/reference/processExpressionMatrix.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processFile.html b/reference/processFile.html index ef3131fc..884adae0 100644 --- a/reference/processFile.html +++ b/reference/processFile.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processGO.html b/reference/processGO.html index 7ea6efc5..1996800e 100644 --- a/reference/processGO.html +++ b/reference/processGO.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processGemmaArray.html b/reference/processGemmaArray.html index dc8c819f..71e874de 100644 --- a/reference/processGemmaArray.html +++ b/reference/processGemmaArray.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processGeneLocation.html b/reference/processGeneLocation.html index d709bc35..9b173f2d 100644 --- a/reference/processGeneLocation.html +++ b/reference/processGeneLocation.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processGenes.html b/reference/processGenes.html index efd69dd9..b4d300ff 100644 --- a/reference/processGenes.html +++ b/reference/processGenes.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processPlatforms.html b/reference/processPlatforms.html index 37c7d142..69c14ece 100644 --- a/reference/processPlatforms.html +++ b/reference/processPlatforms.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processQuantitationTypeValueObject.html b/reference/processQuantitationTypeValueObject.html index e3c1cd34..8ce419c5 100644 --- a/reference/processQuantitationTypeValueObject.html +++ b/reference/processQuantitationTypeValueObject.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processResultSetFactors.html b/reference/processResultSetFactors.html index 830530e3..25a35a02 100644 --- a/reference/processResultSetFactors.html +++ b/reference/processResultSetFactors.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processSamples.html b/reference/processSamples.html index a0373ba0..e78757ee 100644 --- a/reference/processSamples.html +++ b/reference/processSamples.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processSearchAnnotations.html b/reference/processSearchAnnotations.html index 00232cc0..5bacb1aa 100644 --- a/reference/processSearchAnnotations.html +++ b/reference/processSearchAnnotations.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/processTaxon.html b/reference/processTaxon.html index 637cc7a9..f9fee3f8 100644 --- a/reference/processTaxon.html +++ b/reference/processTaxon.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/process_search.html b/reference/process_search.html index a6c78feb..da6f88bf 100644 --- a/reference/process_search.html +++ b/reference/process_search.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/search_annotations.html b/reference/search_annotations.html index ba26849b..d479d88d 100644 --- a/reference/search_annotations.html +++ b/reference/search_annotations.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/search_datasets.html b/reference/search_datasets.html index 0775dbef..89184a85 100644 --- a/reference/search_datasets.html +++ b/reference/search_datasets.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/search_gemma.html b/reference/search_gemma.html index 3ba900e1..f7b7a780 100644 --- a/reference/search_gemma.html +++ b/reference/search_gemma.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/setGemmaPath.html b/reference/setGemmaPath.html index c59c8921..6cc1c883 100644 --- a/reference/setGemmaPath.html +++ b/reference/setGemmaPath.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/set_gemma_user.html b/reference/set_gemma_user.html index b363a136..71d9a0d7 100644 --- a/reference/set_gemma_user.html +++ b/reference/set_gemma_user.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/subset_factorValues.html b/reference/subset_factorValues.html index 4612befe..a86434b1 100644 --- a/reference/subset_factorValues.html +++ b/reference/subset_factorValues.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/update_result.html b/reference/update_result.html index 4a4f195f..45ec4e4d 100644 --- a/reference/update_result.html +++ b/reference/update_result.html @@ -27,7 +27,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/validateBoolean.html b/reference/validateBoolean.html index c706e3d8..388ca64a 100644 --- a/reference/validateBoolean.html +++ b/reference/validateBoolean.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/validateID.html b/reference/validateID.html index c718df65..04d2159d 100644 --- a/reference/validateID.html +++ b/reference/validateID.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/validateLimit.html b/reference/validateLimit.html index 93dd4ec5..babceb87 100644 --- a/reference/validateLimit.html +++ b/reference/validateLimit.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/validateOptionalID.html b/reference/validateOptionalID.html index 88cc3aa4..bd6c9b1a 100644 --- a/reference/validateOptionalID.html +++ b/reference/validateOptionalID.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/validateOptionalQuery.html b/reference/validateOptionalQuery.html index 2c027f5f..157ec18a 100644 --- a/reference/validateOptionalQuery.html +++ b/reference/validateOptionalQuery.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/validateOptionalTaxon.html b/reference/validateOptionalTaxon.html index 17541f73..ce06a102 100644 --- a/reference/validateOptionalTaxon.html +++ b/reference/validateOptionalTaxon.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/validatePositiveInteger.html b/reference/validatePositiveInteger.html index 0e7084ad..4aaed510 100644 --- a/reference/validatePositiveInteger.html +++ b/reference/validatePositiveInteger.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/validateQuery.html b/reference/validateQuery.html index e0c7dede..f28cef9b 100644 --- a/reference/validateQuery.html +++ b/reference/validateQuery.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/validateResultType.html b/reference/validateResultType.html index c12f9aeb..c2d26f69 100644 --- a/reference/validateResultType.html +++ b/reference/validateResultType.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/validateSingleID.html b/reference/validateSingleID.html index 875f89e9..58bf9c11 100644 --- a/reference/validateSingleID.html +++ b/reference/validateSingleID.html @@ -23,7 +23,7 @@ gemma.R - 3.1.1 + 3.1.2 diff --git a/reference/validateSort.html b/reference/validateSort.html index 73c4d2da..7bd25aae 100644 --- a/reference/validateSort.html +++ b/reference/validateSort.html @@ -23,7 +23,7 @@ gemma.R - 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