diff --git a/DESCRIPTION b/DESCRIPTION index f7d915cc..4b7f3e55 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: gemma.R Title: A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses -Version: 2.1.2 +Version: 2.9.0 Authors@R: c(person(given = "Javier", family = "Castillo-Arnemann", role = c("aut"), email = "javiercastilloar@gmail.com", @@ -60,7 +60,6 @@ Suggests: pheatmap, viridis, poolr, - digest, kableExtra Config/testthat/edition: 2 VignetteBuilder: knitr diff --git a/R/convenience.R b/R/convenience.R index 8b917f7b..310f6d04 100644 --- a/R/convenience.R +++ b/R/convenience.R @@ -797,6 +797,8 @@ filter_properties <- function(){ #' these children for any number of terms, including all children #' and the terms itself in the output vector #' +#' @param terms An array of terms +#' #' @return An array containing descendends of the annotation terms, including #' the terms themselves #' diff --git a/R/gemma.R.R b/R/gemma.R.R index 92282910..3d833c2e 100644 --- a/R/gemma.R.R +++ b/R/gemma.R.R @@ -45,4 +45,5 @@ utils::globalVariables(c("platform.ID", "analysis.ID", "analysis.Threshold", "ba "resultIds", "stats.DE", "stats.Down", "stats.Up", "subsetFactor.category", "subsetFactor.categoryURI", "subsetFactor.Enabled", "subsetFactor.factorValue", "subsetFactor.factorValueURI", "valueUri", "category", - "categoryURI", "experimental.factorValue","value","contrast.ID","%$%",'baseline.factors')) + "categoryURI", "experimental.factorValue","value", + "contrast.ID","%$%",'baseline.factors','setting')) diff --git a/man/get_child_terms.Rd b/man/get_child_terms.Rd index be179353..f7675f0b 100644 --- a/man/get_child_terms.Rd +++ b/man/get_child_terms.Rd @@ -6,6 +6,9 @@ \usage{ get_child_terms(terms) } +\arguments{ +\item{terms}{An array of terms} +} \value{ An array containing descendends of the annotation terms, including the terms themselves