Problem with MPI script running Historian on cluster

[ArtPoon]

In a previous mpirun of Historian on BEVi, approximately half of all patient files finished properly and the remaining ones were left blank. MPI script was edited and new run is now active on BEVi.

[jpalmer37]

Found that the Historian run produced some problems. Here are two examples of the error messages.

Traceback (most recent call last):
File "mpihistorian.py", line 39, in <module>
    status = check_call(['historian', '-guide', msa_path+msa_name, '-tree', tree_path+files[i],'-ancseq','-output','fasta'], stdout=outfile)
  File "/usr/local/lib/python2.7/subprocess.py", line 186, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['historian', '-guide', '/home/jpalmer/historian-mcc/msa/30651.fasta', '-tree', '/home/jpalmer/historian-mcc/trees/30651-a.tree', '-ancseq', '-output', 'fasta']' returned non-zero exit status -9
Traceback (most recent call last):
  File "mpihistorian.py", line 39, in <module>
    status = check_call(['historian', '-guide', msa_path+msa_name, '-tree', tree_path+files[i],'-ancseq','-output','fasta'], stdout=outfile)
  File "/usr/local/lib/python2.7/subprocess.py", line 186, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['historian', '-guide', '/home/jpalmer/historian-mcc/msa/12255.fasta', '-tree', '/home/jpalmer/historian-mcc/trees/12255-b.tree', '-ancseq', '-output', 'fasta']' returned non-zero exit status -9

[ArtPoon]

Try running local instance to capture error messages, if any.

[jpalmer37]

I ran a local instance of Historian, saved the error message, and will continue to diagnose the problem with Dr. Holmes on this issue on the Historian GitHub page.