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Proceedings of Workshop on Research Objects (RO2019)

The below articles and abstracts were reviewed to be accepted for RO2019 following the call for contributions.

RO2019 encouraged open peer review, and recommend that reviewers be named and attributed; however reviewers could be anonymous if so desired. Links to the reviews have been added for all submissions below.

See also:

News

  • Added (futute) DOIs in IEEE eScience proceedings
  • Accepted posters announced
  • DOIs updated for author-accepted versions
  • Open Peer reviews published
  • Accepted contributions announced

Articles

Research papers were accepted for talks at RO2019 and published in the IEEE eScience 2019 official conference proceedings (ISBN 978-1-7281-2451-3/19). Accepted abstracts are published below and in the Zenodo ResearchObject community.

Note: Publications in the IEEE eScience 2019 proceedings are unfortunately not Open Access. To encourage Green Open Access we recommended paper authors post their camera-ready version on arXiv or their institutional preprint server according to IEEE's article sharing policies.

Katrina Fenlon (2019):
Interactivity, Distributed Workflows, and Thick Provenance: A Review of Challenges Confronting Digital Humanities Research Objects.
RO-2 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
2019 IEEE 14th International Conference on e-Science (e-Science), pp. 510–513.
Preprint: https://doi.org/10.5281/zenodo.3268809
Cite as: https://doi.org/10.1109/eScience.2019.00067
[peer review]

Imran Asif, Jessica Chen-Burger, Alasdair J G Gray (2019):
Data Quality Issues in Current Nanopublications.
RO-3 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
2019 IEEE 15th International Conference on e-Science (e-Science), pp. 522–527.
Preprint: https://doi.org/10.5281/zenodo.3358983
Cite as: https://doi.org/10.1109/eScience.2019.00069
[peer review]

Kyle Chard, Niall Gaffney, Matthew B. Jones, Kacper Kowalik, Bertram Ludäscher, Jarek Nabrzyski, Victoria Stodden, Ian Taylor, Thomas Thelen, Matthew J. Turk, Craig Willis (2019):
Application of BagIt-Serialized Research Object Bundles for Packaging and Re-execution of Computational Analyses.
RO-5 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
2019 IEEE 15th International Conference on e-Science (e-Science), pp. 514–521.
Preprint: https://doi.org/10.5281/zenodo.3381754
Cite as: https://doi.org/10.1109/eScience.2019.00068 [BDBag] [peer review]

Timothy M. McPhillips, Craig Willis, Michael R. Gryk, Santiago Núñez-Corrales, Bertram Ludäscher (2019): Reproducibility by Other Means: Transparent Research Objects.
RO-6 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
2019 IEEE 15th International Conference on e-Science (e-Science), pp. 502–509.
Preprint: https://doi.org/10.5281/zenodo.3382423
Cite as: https://doi.org/10.1109/eScience.2019.00066 [peer review]

Accepted for talks

These abstracts have been accepted for talks at RO2019:

Anita Bandrowski (2019):
How BIDs and BIDs validator has informed the data aggregation needs of the Stimulating Peripheral Activity to Relieve Conditions, SPARC, consortium.
RO-1 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
https://doi.org/10.5281/zenodo.3265460 [peer review]

Isabelle Perseil, Petr Holub (2019):
Towards a reconstructive methodology for building a provenance metamodel that fits the complex bioinformatics pipelines.
RO-4 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
https://doi.org/10.5281/zenodo.3362412 [peer review]

Frederik Coppens (2019):
The Data Life Cycle in Practice: an Infrastructure Point of View.
RO-7 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
https://doi.org/10.5281/zenodo.3270824 [peer review]

David N. Kennedy (2019):
The ReproPub: A hybrid research object for supporting publication-level re-execution and generalization of neuroimaging research findings.
RO-8 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
https://doi.org/10.5281/zenodo.3336609 [peer review]

Jackson Brown, Nicholas Weber (2019):
DSDB: Reproducible Computational Modeling.
RO-9 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
https://doi.org/10.5281/zenodo.3445531 [peer review]

Mike D'Arcy, Kyle Chard, Ian Foster, Carl Kesselman, Ravi Madduri, Nickolaus Saint, Rick Wagner (2019):
Big Data Bags: A Scalable Packaging Format for Science.
RO-10 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
https://doi.org/10.5281/zenodo.3338725 [peer review]

Anita de Waard, Marina Soares E Silva (2019):
Research Object Composer: A Tool for Publishing Complex Data Objects in the Cloud.
RO-11 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
https://doi.org/10.5281/zenodo.3382263 [peer review]

Rosa Filgueira (2019):
DARE Platform: Enabling Easy Data-Intensive Workflow Composition and Deployment.
RO-12 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
https://doi.org/10.5281/zenodo.3357806 [peer review]

Kristi Holmes, Nicole Vasilevsky, Marijane White, Matthew Brush, Lisa O’Keefe, Karen Gutzman, Melissa Haendel (2019):
Architecting Attribution: expanding the scope of academic credit.
RO-13 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
https://doi.org/10.5281/zenodo.3334688 [peer review]

Daniel S. Katz (2019):
Citation and Research Objects: Toward Active Research Objects.
RO-14 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
https://doi.org/10.5281/zenodo.3338176 [peer review]

Eoghan Ó Carragáin, Carole Goble, Peter Sefton, Stian Soiland-Reyes (2019): RO-Crate, a lightweight approach to Research Object data packaging.
RO-15 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
https://doi.org/10.5281/zenodo.3337883 [peer review]

Accepted for poster/demo

Nic Weber (2019): Packaging Municipal Legislative Event Data for Reuse & Exchange. Poster. RO-16 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
Abstract: https://doi.org/10.5281/zenodo.3380592 [peer review]

James Myers, Sebastian Karcher, Sebastian Ostrowski, Nic Weber (2019): Simple, Standards-based Archiving in Dataverse. Poster. RO-17 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
Abstract: https://doi.org/10.5281/zenodo.3384296 [peer review]

Jackson Brown (2019): Managing Manifests and Distributing Datasets Poster. RO-18 at Workshop on Research Objects (RO 2019), 24 Sept 2019, San Diego, CA, USA.
Abstract: https://doi.org/10.5281/zenodo.3384296 [peer review]