Dockerfile

# Use the official micromamba image as a base
FROM mambaorg/micromamba:latest
LABEL maintainer="Miguel A. Ibarra-Arellano"

# Set the base layer for micromamba
USER root
COPY environment.yml .

# Update package manager and install essential build tools
RUN apt-get update -qq && apt-get install -y \
    build-essential \
    ffmpeg \
    libsm6 \
    libxext6 \
    procps

# Set the environment variable for the root prefix
ARG MAMBA_ROOT_PREFIX=/opt/conda

# Add /opt/conda/bin to the PATH
ENV PATH $MAMBA_ROOT_PREFIX/bin:$PATH

# Install dependencies with micromamba, clean afterwards
RUN micromamba env create -f environment.yml \
    && micromamba clean --all --yes

# Add environment to PATH
ENV PATH="/opt/conda/envs/mask2bbox/bin:$PATH"

# Set the working directory
WORKDIR /mask2bbox

# Copy contents of the folder to the working directory
COPY ../mask2bbox .