diff --git a/indication_paths.json b/indication_paths.json index c746ec2b9..2f5a5a40d 100644 --- a/indication_paths.json +++ b/indication_paths.json @@ -235429,5 +235429,1748 @@ "https://en.wikipedia.org/wiki/Sivelestat", "https://go.drugbank.com/drugs/DB12863" ] + }, + { + "directed": true, + "graph": { + "_id": "DB11613_MESH_D019698_1", + "disease": "Chronic hepatitis C", + "disease_mesh": "MESH:D019698", + "drug": "velpatasvir", + "drug_mesh": "MESH:C000604171", + "drugbank": "DB:DB11613" + }, + "links": [ + { + "key": "negatively regulates", + "source": "MESH:C000604171", + "target": "UniProt:Q5L478" + }, + { + "key": "molecularly interacts with", + "source": "UniProt:Q5L478", + "target": "MESH:C000618292" + }, + { + "key": "increases abundance of", + "source": "MESH:C000618292", + "target": "MESH:C037178" + }, + { + "key": "positively correlated with", + "source": "MESH:C037178", + "target": "MESH:D002784" + }, + { + "key": "located in", + "source": "MESH:D002784", + "target": 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+ "directed": true, + "graph": { + "_id": "DB00349_MESH_D065768_1", + "disease": "Lennox-Gastaut syndrome", + "disease_mesh": "MESH:D065768", + "drug": "clobazam", + "drug_mesh": "MESH:C012255", + "drugbank": "DB:DB00349" + }, + "links": [ + { + "key": "increases activity of", + "source": "MESH:C012255", + "target": "InterPro:IPR006028" + }, + { + "key": "positively regulates", + "source": "InterPro:IPR006028", + "target": "GO:0051932" + }, + { + "key": "negatively correlated with", + "source": "GO:0051932", + "target": "HP:0032792" + }, + { + "key": "manifestation of", + "source": "HP:0032792", + "target": "MESH:D065768" + } + ], + "multigraph": true, + "nodes": [ + { + "id": "MESH:C012255", + "label": "Drug", + "name": "clobazam" + }, + { + "id": "InterPro:IPR006028", + "label": "GeneFamily", + "name": "Gamma-aminobutyric acid A receptor/Glycine receptor alpha" + }, + { + "id": "GO:0051932", + "label": "BiologicalProcess", + "name": "synaptic transmission, GABAergic" + }, + { + "id": "HP:0032792", + "label": "PhenotypicFeature", + "name": "Tonic seizure" + }, + { + "id": "MESH:D065768", + "label": "Disease", + "name": "Lennox-Gastaut syndrome" + } + ], + "reference": [ + "https://go.drugbank.com/drugs/DB00349", + "https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL70418/", + "https://en.wikipedia.org/wiki/Clobazam#Pharmacology" + ] + }, + { + "directed": true, + "graph": { + "_id": "DB13783_MESH_D012216_1", + "disease": "Rheumatism", + "disease_mesh": "MESH:D012216", + "drug": "acemetacin", + "drug_mesh": "MESH:C026784", + "drugbank": "DB:DB13783" + }, + "links": [ + { + "key": "has metabolite", + "source": "MESH:C026784", + "target": "DB:DB00328" + }, + { + "key": "negatively regulates", + "source": "DB:DB00328", + "target": "UniProt:P35354" + }, + { + "key": "negatively regulates", + "source": "DB:DB00328", + "target": "UniProt:P23219" + }, + { + "key": "participates in", + "source": "UniProt:P23219", + "target": "REACT:R-HSA-2162123" + }, + { + "key": "participates in", + "source": "UniProt:P35354", + "target": "REACT:R-HSA-2162123" + }, + { + "key": "increases abundance of", + "source": "REACT:R-HSA-2162123", + "target": "CHEBI:26333" + }, + { + "key": "negatively correlated with", + "source": "CHEBI:26333", + "target": "GO:0006954" + }, + { + "key": "negatively correlated with", + "source": "GO:0006954", + "target": "MESH:D012216" + } + ], + "multigraph": true, + "nodes": [ + { + "alt_ids": [ + "MESH:C519896" + ], + "alt_names": [ + "acemethacin" + ], + "id": "MESH:C026784", + "label": "Drug", + "name": "acemetacin" + }, + { + "id": "DB:DB00328", + "label": "ChemicalSubstance", + "name": "Indomethacin" + }, + { + "id": "UniProt:P23219", + "label": "Protein", + "name": "Prostaglandin G/H synthase 1" + }, + { + "id": "UniProt:P35354", + "label": "Protein", + "name": "Prostaglandin G/H synthase 2" + }, + { + "id": "REACT:R-HSA-2162123", + "label": "Pathway", + "name": "Synthesis of Prostaglandins (PG) and Thromboxanes (TX)" + }, + { + "id": "CHEBI:26333", + "label": "ChemicalSubstance", + "name": "prostaglandin" + }, + { + "id": "GO:0006954", + "label": "BiologicalProcess", + "name": "inflammatory response" + }, + { + "id": "MESH:D012216", + "label": "Disease", + "name": "Rheumatism" + } + ], + "reference": [ + "https://go.drugbank.com/drugs/DB13783" + ] } ] \ No newline at end of file diff --git a/indication_paths.yaml b/indication_paths.yaml index 1c4c40fa5..0cbdcb1c1 100644 --- a/indication_paths.yaml +++ b/indication_paths.yaml @@ -148002,3 +148002,1094 @@ reference: - https://en.wikipedia.org/wiki/Sivelestat - https://go.drugbank.com/drugs/DB12863 +- directed: true + graph: + _id: DB11613_MESH_D019698_1 + disease: Chronic hepatitis C + disease_mesh: MESH:D019698 + drug: velpatasvir + drug_mesh: MESH:C000604171 + drugbank: DB:DB11613 + links: + - key: negatively regulates + source: MESH:C000604171 + target: UniProt:Q5L478 + - key: molecularly interacts with + source: UniProt:Q5L478 + target: MESH:C000618292 + - key: increases abundance of + source: MESH:C000618292 + target: MESH:C037178 + - key: positively correlated with + source: MESH:C037178 + target: MESH:D002784 + - key: located in + source: MESH:D002784 + target: MESH:D000086969 + - key: location of + source: MESH:D000086969 + target: GO:0039694 + - key: positively regulates + source: UniProt:Q5L478 + target: GO:0003968 + - key: positively regulates + source: GO:0003968 + target: GO:0039694 + - key: positively regulates + source: UniProt:Q5L478 + target: GO:0004197 + - key: positively regulates + source: UniProt:Q5L478 + target: GO:0004252 + - key: positively correlated with + source: GO:0004197 + target: MESH:D014779 + - key: positively correlated with + source: GO:0004252 + target: MESH:D014779 + - key: positively correlated with + source: MESH:D014779 + target: MESH:D019065 + - key: in taxon + source: GO:0039694 + target: NCBITaxon:11103 + - key: in taxon + source: MESH:D019065 + target: NCBITaxon:11103 + - key: causes + source: NCBITaxon:11103 + target: MESH:D019698 + multigraph: true + nodes: + - id: MESH:C000604171 + label: Drug + name: velpatasvir + - id: UniProt:Q5L478 + label: Protein + name: Nonstructural protein 5A + - id: GO:0003968 + label: MolecularActivity + name: RNA-directed 5'-3' RNA polymerase activity + - id: GO:0039694 + label: BiologicalProcess + name: viral RNA genome replication + - id: MESH:C000618292 + label: Protein + name: PI4KIIIalpha protein, human + - id: MESH:C037178 + label: ChemicalSubstance + name: phosphatidylinositol 4-phosphate + - id: MESH:D002784 + label: ChemicalSubstance + name: Cholesterol + - id: MESH:D000086969 + label: CellularComponent + name: Viral Replication Compartments + - id: GO:0004197 + label: MolecularActivity + name: cysteine-type endopeptidase activity + - id: GO:0004252 + label: MolecularActivity + name: serine-type endopeptidase activity + - id: MESH:D014779 + label: BiologicalProcess + name: Virus Replication + - id: MESH:D019065 + label: BiologicalProcess + name: Virus Assembly + - id: NCBITaxon:11103 + label: OrganismTaxon + name: Hepacivirus C + - id: MESH:D019698 + label: Disease + name: Chronic hepatitis C + reference: + - https://go.drugbank.com/drugs/DB11613 + - https://en.wikipedia.org/wiki/Velpatasvir#Mechanism_of_action + - https://en.wikipedia.org/wiki/Discovery_and_development_of_NS5A_inhibitors#Mechanism_of_action + - https://en.wikipedia.org/wiki/Discovery_and_development_of_NS5A_inhibitors#Function + - https://pubmed.ncbi.nlm.nih.gov/25384189/ + - https://www.ncbi.nlm.nih.gov/books/NBK1623/ +- directed: true + graph: + _id: DB01053_MESH_D012541_1 + disease: Scarlet fever + disease_mesh: MESH:D012541 + drug: benzathine benzylpenicillin + drug_mesh: MESH:D010401 + drugbank: DB:DB01053 + links: + - key: negatively regulates + source: MESH:D010401 + target: InterPro:IPR001460 + - key: positively correlated with + source: InterPro:IPR001460 + target: GO:0009252 + - key: positively correlated with + source: GO:0009252 + target: GO:0071555 + - key: in taxon + source: GO:0071555 + target: NCBITaxon:1314 + - key: causes + source: NCBITaxon:1314 + target: MESH:D012541 + multigraph: true + nodes: + - alt_ids: + - DB:DBSALT002768 + alt_names: + - Penicillin G Benzathine + - Benzylpenicillin + - Benzylpenicillin benzathine hydrate + id: MESH:D010401 + label: Drug + name: benzathine benzylpenicillin + - id: InterPro:IPR001460 + label: GeneFamily + name: Penicillin-binding protein, transpeptidase + - id: GO:0009252 + label: BiologicalProcess + name: peptidoglycan biosynthetic process + - id: GO:0071555 + label: BiologicalProcess + name: cell wall organization + - id: NCBITaxon:1314 + label: OrganismTaxon + name: Streptococcus pyogenes + - id: MESH:D012541 + label: Disease + name: Scarlet fever + reference: + - https://go.drugbank.com/drugs/DB01053 +- directed: true + graph: + _id: DB01053_MESH_D013290_1 + disease: Streptococcus pyogenes infection + disease_mesh: MESH:D013290 + drug: benzathine benzylpenicillin + drug_mesh: MESH:D010401 + drugbank: DB:DB01053 + links: + - key: negatively regulates + source: MESH:D010401 + target: InterPro:IPR001460 + - key: positively correlated with + source: InterPro:IPR001460 + target: GO:0009252 + - key: positively correlated with + source: GO:0009252 + target: GO:0071555 + - key: in taxon + source: GO:0071555 + target: NCBITaxon:1314 + - key: causes + source: NCBITaxon:1314 + target: MESH:D013290 + multigraph: true + nodes: + - alt_ids: + - DB:DBSALT002768 + alt_names: + - Penicillin G Benzathine + - Benzylpenicillin + - Benzylpenicillin benzathine hydrate + id: MESH:D010401 + label: Drug + name: benzathine benzylpenicillin + - id: InterPro:IPR001460 + label: GeneFamily + name: Penicillin-binding protein, transpeptidase + - id: GO:0009252 + label: BiologicalProcess + name: peptidoglycan biosynthetic process + - id: GO:0071555 + label: BiologicalProcess + name: cell wall organization + - id: NCBITaxon:1314 + label: OrganismTaxon + name: Streptococcus pyogenes + - id: MESH:D013290 + label: Disease + name: Streptococcus pyogenes infection + reference: + - https://go.drugbank.com/drugs/DB01053 +- directed: true + graph: + _id: DB01053_MESH_D004886_1 + disease: Erysipelas + disease_mesh: MESH:D004886 + drug: benzathine benzylpenicillin + drug_mesh: MESH:D010401 + drugbank: DB:DB01053 + links: + - key: negatively regulates + source: MESH:D010401 + target: InterPro:IPR001460 + - key: positively correlated with + source: InterPro:IPR001460 + target: GO:0009252 + - key: positively correlated with + source: GO:0009252 + target: GO:0071555 + - key: in taxon + source: GO:0071555 + target: NCBITaxon:1314 + - key: causes + source: NCBITaxon:1314 + target: MESH:D004886 + multigraph: true + nodes: + - alt_ids: + - DB:DBSALT002768 + alt_names: + - Penicillin G Benzathine + - Benzylpenicillin + - Benzylpenicillin benzathine hydrate + id: MESH:D010401 + label: Drug + name: benzathine benzylpenicillin + - id: InterPro:IPR001460 + label: GeneFamily + name: Penicillin-binding protein, transpeptidase + - id: GO:0009252 + label: BiologicalProcess + name: peptidoglycan biosynthetic process + - id: GO:0071555 + label: BiologicalProcess + name: cell wall organization + - id: NCBITaxon:1314 + label: OrganismTaxon + name: Streptococcus pyogenes + - id: MESH:D004886 + label: Disease + name: Erysipelas + reference: + - https://go.drugbank.com/drugs/DB01053 +- directed: true + graph: + _id: DB01053_MESH_D011018_1 + disease: Pneumococcal pneumonia + disease_mesh: MESH:D011018 + drug: benzathine benzylpenicillin + drug_mesh: MESH:D010401 + drugbank: DB:DB01053 + links: + - key: negatively regulates + source: MESH:D010401 + target: InterPro:IPR001460 + - key: positively correlated with + source: InterPro:IPR001460 + target: GO:0009252 + - key: positively correlated with + source: GO:0009252 + target: GO:0071555 + - key: in taxon + source: GO:0071555 + target: NCBITaxon:1313 + - key: causes + source: NCBITaxon:1313 + target: MESH:D011018 + multigraph: true + nodes: + - alt_ids: + - DB:DBSALT002768 + alt_names: + - Penicillin G Benzathine + - Benzylpenicillin + - Benzylpenicillin benzathine hydrate + id: MESH:D010401 + label: Drug + name: benzathine benzylpenicillin + - id: InterPro:IPR001460 + label: GeneFamily + name: Penicillin-binding protein, transpeptidase + - id: GO:0009252 + label: BiologicalProcess + name: peptidoglycan biosynthetic process + - id: GO:0071555 + label: BiologicalProcess + name: cell wall organization + - id: NCBITaxon:1313 + label: OrganismTaxon + name: Streptococcus pneumoniae + - id: MESH:D011018 + label: Disease + name: Pneumococcal pneumonia + reference: + - https://go.drugbank.com/drugs/DB01053 +- directed: true + graph: + _id: DB09063_MESH_D002289_1 + disease: Non-small cell lung cancer + disease_mesh: MESH:D002289 + drug: ceritinib + drug_mesh: MESH:C586847 + drugbank: DB:DB09063 + links: + - key: decreases activity of + source: MESH:C586847 + target: UniProt:Q9UM73 + - key: positively regulates + source: UniProt:Q9UM73 + target: GO:0008283 + - key: positively correlated with + source: GO:0008283 + target: MESH:D002289 + multigraph: true + nodes: + - id: MESH:C586847 + label: Drug + name: ceritinib + - id: UniProt:Q9UM73 + label: Protein + name: ALK tyrosine kinase receptor + - id: GO:0008283 + label: BiologicalProcess + name: cell population proliferation + - id: MESH:D002289 + label: Disease + name: Non-small cell lung cancer + reference: + - https://go.drugbank.com/drugs/DB09063 + - https://en.wikipedia.org/wiki/Ceritinib#Mechanism_of_action +- directed: true + graph: + _id: DB00869_MESH_D009798_1 + disease: Ocular hypertension + disease_mesh: MESH:D009798 + drug: dorzolamide + drug_mesh: MESH:C062765 + drugbank: DB:DB00869 + links: + - key: negatively regulates + source: MESH:C062765 + target: UniProt:P00918 + - key: positively regulates + source: UniProt:P00918 + target: GO:0015701 + - key: increases abundance of + source: GO:0015701 + target: UBERON:0001796 + - key: positively correlated with + source: UBERON:0001796 + target: MESH:D009798 + multigraph: true + nodes: + - id: MESH:C062765 + label: Drug + name: dorzolamide + - id: UniProt:P00918 + label: Protein + name: Carbonic anhydrase 2 + - id: GO:0015701 + label: BiologicalProcess + name: bicarbonate transport + - id: UBERON:0001796 + label: GrossAnatomicalStructure + name: aqueous humor of eyeball + - id: MESH:D009798 + label: Disease + name: Ocular hypertension + reference: + - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL218490/ + - https://pubchem.ncbi.nlm.nih.gov/compound/5284549#section=Mechanism-of-Action + - https://en.wikipedia.org/wiki/Glaucoma#Medication + - https://www.aaopt.org/docs/knowledge-base/outline26514.doc?sfvrsn=5f863d3_0 + - https://en.wikipedia.org/wiki/Aqueous_humour#Clinical_significance +- directed: true + graph: + _id: DB00869_MESH_D005902_1 + disease: Open-angle glaucoma + disease_mesh: MESH:D005902 + drug: dorzolamide + drug_mesh: MESH:C062765 + drugbank: DB:DB00869 + links: + - key: negatively regulates + source: MESH:C062765 + target: UniProt:P00918 + - key: positively regulates + source: UniProt:P00918 + target: GO:0015701 + - key: increases abundance of + source: GO:0015701 + target: UBERON:0001796 + - key: positively correlated with + source: UBERON:0001796 + target: HP:0007906 + - key: manifestation of + source: HP:0007906 + target: MESH:D005902 + multigraph: true + nodes: + - id: MESH:C062765 + label: Drug + name: dorzolamide + - id: UniProt:P00918 + label: Protein + name: Carbonic anhydrase 2 + - id: GO:0015701 + label: BiologicalProcess + name: bicarbonate transport + - id: UBERON:0001796 + label: GrossAnatomicalStructure + name: aqueous humor of eyeball + - id: HP:0007906 + label: PhenotypicFeature + name: Ocular Hypertension + - id: MESH:D005902 + label: Disease + name: Open-angle glaucoma + reference: + - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL218490/ + - https://pubchem.ncbi.nlm.nih.gov/compound/5284549#section=Mechanism-of-Action + - https://en.wikipedia.org/wiki/Glaucoma#Medication + - https://www.aaopt.org/docs/knowledge-base/outline26514.doc?sfvrsn=5f863d3_0 + - https://en.wikipedia.org/wiki/Aqueous_humour#Clinical_significance +- directed: true + graph: + _id: DB00841_MESH_D012770_1 + disease: Cardiogenic shock + disease_mesh: MESH:D012770 + drug: dobutamine + drug_mesh: MESH:D004280 + drugbank: DB:DB00841 + links: + - key: positively regulates + source: MESH:D004280 + target: UniProt:P08588 + - key: positively regulates + source: UniProt:P08588 + target: GO:0060047 + - key: negatively correlated with + source: GO:0060047 + target: HP:0002615 + - key: manifestation of + source: HP:0002615 + target: MESH:D012770 + multigraph: true + nodes: + - id: MESH:D004280 + label: Drug + name: dobutamine + - id: UniProt:P08588 + label: Protein + name: Beta-1 adrenergic receptor + - id: GO:0060047 + label: BiologicalProcess + name: heart contraction + - id: HP:0002615 + label: PhenotypicFeature + name: Hypotension + - id: MESH:D012770 + label: Disease + name: Cardiogenic shock + reference: + - https://pubchem.ncbi.nlm.nih.gov/compound/36811#section=Mechanism-of-Action + - https://en.wikipedia.org/wiki/Dobutamine#Pharmacology + - https://go.drugbank.com/drugs/DB00841#BE0000172 + - https://en.wikipedia.org/wiki/Cardiogenic_shock#Signs_and_symptoms +- directed: true + graph: + _id: DB00328_MESH_D013717_1 + disease: Tenosynovitis + disease_mesh: MESH:D013717 + drug: indomethacin + drug_mesh: MESH:D007213 + drugbank: DB:DB00328 + links: + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P23219 + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P35354 + - key: participates in + source: UniProt:P23219 + target: REACT:R-HSA-2162123 + - key: participates in + source: UniProt:P35354 + target: REACT:R-HSA-2162123 + - key: increases abundance of + source: REACT:R-HSA-2162123 + target: CHEBI:26333 + - key: positively correlated with + source: CHEBI:26333 + target: GO:0006954 + - key: positively correlated with + source: GO:0006954 + target: MESH:D013717 + multigraph: true + nodes: + - id: MESH:D007213 + label: Drug + name: indomethacin + - id: UniProt:P23219 + label: Protein + name: Prostaglandin G/H synthase 1 + - id: UniProt:P35354 + label: Protein + name: Prostaglandin G/H synthase 2 + - id: REACT:R-HSA-2162123 + label: Pathway + name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) + - id: CHEBI:26333 + label: ChemicalSubstance + name: prostaglandin + - id: GO:0006954 + label: BiologicalProcess + name: inflammatory response + - id: MESH:D013717 + label: Disease + name: Tenosynovitis + reference: + - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ +- directed: true + graph: + _id: DB00328_MESH_D002062_1 + disease: Bursitis + disease_mesh: MESH:D002062 + drug: indomethacin + drug_mesh: MESH:D007213 + drugbank: DB:DB00328 + links: + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P23219 + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P35354 + - key: participates in + source: UniProt:P23219 + target: REACT:R-HSA-2162123 + - key: participates in + source: UniProt:P35354 + target: REACT:R-HSA-2162123 + - key: increases abundance of + source: REACT:R-HSA-2162123 + target: CHEBI:26333 + - key: positively correlated with + source: CHEBI:26333 + target: GO:0006954 + - key: positively correlated with + source: GO:0006954 + target: MESH:D002062 + multigraph: true + nodes: + - id: MESH:D007213 + label: Drug + name: indomethacin + - id: UniProt:P23219 + label: Protein + name: Prostaglandin G/H synthase 1 + - id: UniProt:P35354 + label: Protein + name: Prostaglandin G/H synthase 2 + - id: REACT:R-HSA-2162123 + label: Pathway + name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) + - id: CHEBI:26333 + label: ChemicalSubstance + name: prostaglandin + - id: GO:0006954 + label: BiologicalProcess + name: inflammatory response + - id: MESH:D002062 + label: Disease + name: Bursitis + reference: + - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ +- directed: true + graph: + _id: DB00328_MESH_D001172_1 + disease: Rheumatoid arthritis + disease_mesh: MESH:D001172 + drug: indomethacin + drug_mesh: MESH:D007213 + drugbank: DB:DB00328 + links: + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P23219 + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P35354 + - key: participates in + source: UniProt:P23219 + target: REACT:R-HSA-2162123 + - key: participates in + source: UniProt:P35354 + target: REACT:R-HSA-2162123 + - key: increases abundance of + source: REACT:R-HSA-2162123 + target: CHEBI:26333 + - key: positively correlated with + source: CHEBI:26333 + target: GO:0006954 + - key: positively correlated with + source: GO:0006954 + target: MESH:D001172 + multigraph: true + nodes: + - id: MESH:D007213 + label: Drug + name: indomethacin + - id: UniProt:P23219 + label: Protein + name: Prostaglandin G/H synthase 1 + - id: UniProt:P35354 + label: Protein + name: Prostaglandin G/H synthase 2 + - id: REACT:R-HSA-2162123 + label: Pathway + name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) + - id: CHEBI:26333 + label: ChemicalSubstance + name: prostaglandin + - id: GO:0006954 + label: BiologicalProcess + name: inflammatory response + - id: MESH:D001172 + label: Disease + name: Rheumatoid arthritis + reference: + - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ +- directed: true + graph: + _id: DB00328_MESH_D013167_1 + disease: Ankylosing spondylitis + disease_mesh: MESH:D013167 + drug: indomethacin + drug_mesh: MESH:D007213 + drugbank: DB:DB00328 + links: + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P23219 + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P35354 + - key: participates in + source: UniProt:P23219 + target: REACT:R-HSA-2162123 + - key: participates in + source: UniProt:P35354 + target: REACT:R-HSA-2162123 + - key: increases abundance of + source: REACT:R-HSA-2162123 + target: CHEBI:26333 + - key: positively correlated with + source: CHEBI:26333 + target: GO:0006954 + - key: positively correlated with + source: GO:0006954 + target: MESH:D013167 + multigraph: true + nodes: + - id: MESH:D007213 + label: Drug + name: indomethacin + - id: UniProt:P23219 + label: Protein + name: Prostaglandin G/H synthase 1 + - id: UniProt:P35354 + label: Protein + name: Prostaglandin G/H synthase 2 + - id: REACT:R-HSA-2162123 + label: Pathway + name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) + - id: CHEBI:26333 + label: ChemicalSubstance + name: prostaglandin + - id: GO:0006954 + label: BiologicalProcess + name: inflammatory response + - id: MESH:D013167 + label: Disease + name: Ankylosing spondylitis + reference: + - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ +- directed: true + graph: + _id: DB00328_MESH_D006073_1 + disease: Gout + disease_mesh: MESH:D006073 + drug: indomethacin + drug_mesh: MESH:D007213 + drugbank: DB:DB00328 + links: + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P23219 + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P35354 + - key: participates in + source: UniProt:P23219 + target: REACT:R-HSA-2162123 + - key: participates in + source: UniProt:P35354 + target: REACT:R-HSA-2162123 + - key: increases abundance of + source: REACT:R-HSA-2162123 + target: CHEBI:26333 + - key: positively correlated with + source: CHEBI:26333 + target: GO:0006954 + - key: positively correlated with + source: GO:0006954 + target: MESH:D006073 + multigraph: true + nodes: + - id: MESH:D007213 + label: Drug + name: indomethacin + - id: UniProt:P23219 + label: Protein + name: Prostaglandin G/H synthase 1 + - id: UniProt:P35354 + label: Protein + name: Prostaglandin G/H synthase 2 + - id: REACT:R-HSA-2162123 + label: Pathway + name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) + - id: CHEBI:26333 + label: ChemicalSubstance + name: prostaglandin + - id: GO:0006954 + label: BiologicalProcess + name: inflammatory response + - id: MESH:D006073 + label: Disease + name: Gout + reference: + - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ +- directed: true + graph: + _id: DB00328_MESH_D052256_1 + disease: Tendinitis + disease_mesh: MESH:D052256 + drug: indomethacin + drug_mesh: MESH:D007213 + drugbank: DB:DB00328 + links: + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P23219 + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P35354 + - key: participates in + source: UniProt:P23219 + target: REACT:R-HSA-2162123 + - key: participates in + source: UniProt:P35354 + target: REACT:R-HSA-2162123 + - key: increases abundance of + source: REACT:R-HSA-2162123 + target: CHEBI:26333 + - key: positively correlated with + source: CHEBI:26333 + target: GO:0006954 + - key: positively correlated with + source: GO:0006954 + target: MESH:D052256 + multigraph: true + nodes: + - id: MESH:D007213 + label: Drug + name: indomethacin + - id: UniProt:P23219 + label: Protein + name: Prostaglandin G/H synthase 1 + - id: UniProt:P35354 + label: Protein + name: Prostaglandin G/H synthase 2 + - id: REACT:R-HSA-2162123 + label: Pathway + name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) + - id: CHEBI:26333 + label: ChemicalSubstance + name: prostaglandin + - id: GO:0006954 + label: BiologicalProcess + name: inflammatory response + - id: MESH:D052256 + label: Disease + name: Tendinitis + reference: + - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ +- directed: true + graph: + _id: DB00328_MESH_D013585_1 + disease: Synovitis + disease_mesh: MESH:D013585 + drug: indomethacin + drug_mesh: MESH:D007213 + drugbank: DB:DB00328 + links: + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P23219 + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P35354 + - key: participates in + source: UniProt:P23219 + target: REACT:R-HSA-2162123 + - key: participates in + source: UniProt:P35354 + target: REACT:R-HSA-2162123 + - key: increases abundance of + source: REACT:R-HSA-2162123 + target: CHEBI:26333 + - key: positively correlated with + source: CHEBI:26333 + target: GO:0006954 + - key: positively correlated with + source: GO:0006954 + target: MESH:D013585 + multigraph: true + nodes: + - id: MESH:D007213 + label: Drug + name: indomethacin + - id: UniProt:P23219 + label: Protein + name: Prostaglandin G/H synthase 1 + - id: UniProt:P35354 + label: Protein + name: Prostaglandin G/H synthase 2 + - id: REACT:R-HSA-2162123 + label: Pathway + name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) + - id: CHEBI:26333 + label: ChemicalSubstance + name: prostaglandin + - id: GO:0006954 + label: BiologicalProcess + name: inflammatory response + - id: MESH:D013585 + label: Disease + name: Synovitis + reference: + - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ +- directed: true + graph: + _id: DB00328_MESH_D010003_1 + disease: Osteoarthritis + disease_mesh: MESH:D010003 + drug: indomethacin + drug_mesh: MESH:D007213 + drugbank: DB:DB00328 + links: + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P23219 + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P35354 + - key: participates in + source: UniProt:P23219 + target: REACT:R-HSA-2162123 + - key: participates in + source: UniProt:P35354 + target: REACT:R-HSA-2162123 + - key: increases abundance of + source: REACT:R-HSA-2162123 + target: CHEBI:26333 + - key: positively correlated with + source: CHEBI:26333 + target: GO:0006954 + - key: positively correlated with + source: GO:0006954 + target: MESH:D010003 + multigraph: true + nodes: + - id: MESH:D007213 + label: Drug + name: indomethacin + - id: UniProt:P23219 + label: Protein + name: Prostaglandin G/H synthase 1 + - id: UniProt:P35354 + label: Protein + name: Prostaglandin G/H synthase 2 + - id: REACT:R-HSA-2162123 + label: Pathway + name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) + - id: CHEBI:26333 + label: ChemicalSubstance + name: prostaglandin + - id: GO:0006954 + label: BiologicalProcess + name: inflammatory response + - id: MESH:D010003 + label: Disease + name: Osteoarthritis + reference: + - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ +- directed: true + graph: + _id: DB00328_MESH_D004374_1 + disease: Patent ductus arteriosus + disease_mesh: MESH:D004374 + drug: indomethacin + drug_mesh: MESH:D007213 + drugbank: DB:DB00328 + links: + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P23219 + - key: negatively regulates + source: MESH:D007213 + target: UniProt:P35354 + - key: participates in + source: UniProt:P23219 + target: REACT:R-HSA-2162123 + - key: participates in + source: UniProt:P35354 + target: REACT:R-HSA-2162123 + - key: increases abundance of + source: REACT:R-HSA-2162123 + target: CHEBI:26333 + - key: negatively correlated with + source: CHEBI:26333 + target: GO:0097070 + - key: negatively correlated with + source: GO:0097070 + target: MESH:D004374 + multigraph: true + nodes: + - id: MESH:D007213 + label: Drug + name: indomethacin + - id: UniProt:P23219 + label: Protein + name: Prostaglandin G/H synthase 1 + - id: UniProt:P35354 + label: Protein + name: Prostaglandin G/H synthase 2 + - id: REACT:R-HSA-2162123 + label: Pathway + name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) + - id: CHEBI:26333 + label: ChemicalSubstance + name: prostaglandin + - id: GO:0097070 + label: BiologicalProcess + name: ductus arteriosus closure + - id: MESH:D004374 + label: Disease + name: Patent ductus arteriosus + reference: + - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ + - https://en.wikipedia.org/wiki/Patent_ductus_arteriosus#Prostaglandin_inhibitors +- directed: true + graph: + _id: DB00349_MESH_D065768_1 + disease: Lennox-Gastaut syndrome + disease_mesh: MESH:D065768 + drug: clobazam + drug_mesh: MESH:C012255 + drugbank: DB:DB00349 + links: + - key: increases activity of + source: MESH:C012255 + target: InterPro:IPR006028 + - key: positively regulates + source: InterPro:IPR006028 + target: GO:0051932 + - key: negatively correlated with + source: GO:0051932 + target: HP:0032792 + - key: manifestation of + source: HP:0032792 + target: MESH:D065768 + multigraph: true + nodes: + - id: MESH:C012255 + label: Drug + name: clobazam + - id: InterPro:IPR006028 + label: GeneFamily + name: Gamma-aminobutyric acid A receptor/Glycine receptor alpha + - id: GO:0051932 + label: BiologicalProcess + name: synaptic transmission, GABAergic + - id: HP:0032792 + label: PhenotypicFeature + name: Tonic seizure + - id: MESH:D065768 + label: Disease + name: Lennox-Gastaut syndrome + reference: + - https://go.drugbank.com/drugs/DB00349 + - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL70418/ + - https://en.wikipedia.org/wiki/Clobazam#Pharmacology +- directed: true + graph: + _id: DB13783_MESH_D012216_1 + disease: Rheumatism + disease_mesh: MESH:D012216 + drug: acemetacin + drug_mesh: MESH:C026784 + drugbank: DB:DB13783 + links: + - key: has metabolite + source: MESH:C026784 + target: DB:DB00328 + - key: negatively regulates + source: DB:DB00328 + target: UniProt:P35354 + - key: negatively regulates + source: DB:DB00328 + target: UniProt:P23219 + - key: participates in + source: UniProt:P23219 + target: REACT:R-HSA-2162123 + - key: participates in + source: UniProt:P35354 + target: REACT:R-HSA-2162123 + - key: increases abundance of + source: REACT:R-HSA-2162123 + target: CHEBI:26333 + - key: negatively correlated with + source: CHEBI:26333 + target: GO:0006954 + - key: negatively correlated with + source: GO:0006954 + target: MESH:D012216 + multigraph: true + nodes: + - alt_ids: + - MESH:C519896 + alt_names: + - acemethacin + id: MESH:C026784 + label: Drug + name: acemetacin + - id: DB:DB00328 + label: ChemicalSubstance + name: Indomethacin + - id: UniProt:P23219 + label: Protein + name: Prostaglandin G/H synthase 1 + - id: UniProt:P35354 + label: Protein + name: Prostaglandin G/H synthase 2 + - id: REACT:R-HSA-2162123 + label: Pathway + name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) + - id: CHEBI:26333 + label: ChemicalSubstance + name: prostaglandin + - id: GO:0006954 + label: BiologicalProcess + name: inflammatory response + - id: MESH:D012216 + label: Disease + name: Rheumatism + reference: + - https://go.drugbank.com/drugs/DB13783 diff --git a/submission.yaml b/submission.yaml index e4d4e764a..8b1378917 100644 --- a/submission.yaml +++ b/submission.yaml @@ -1,1059 +1 @@ -- directed: true - graph: - disease: Chronic hepatitis C - disease_mesh: MESH:D019698 - drug: velpatasvir - drug_mesh: MESH:C000604171 - drugbank: DB:DB11613 - links: - - key: negatively regulates - source: MESH:C000604171 - target: UniProt:Q5L478 - - key: molecularly interacts with - source: UniProt:Q5L478 - target: MESH:C000618292 - - key: increases abundance of - source: MESH:C000618292 - target: MESH:C037178 - - key: positively correlated with - source: MESH:C037178 - target: MESH:D002784 - - key: located in - source: MESH:D002784 - target: MESH:D000086969 - - key: location of - source: MESH:D000086969 - target: GO:0039694 - - key: positively regulates - source: UniProt:Q5L478 - target: GO:0003968 - - key: positively regulates - source: GO:0003968 - target: GO:0039694 - - key: positively regulates - source: UniProt:Q5L478 - target: GO:0004197 - - key: positively regulates - source: UniProt:Q5L478 - target: GO:0004252 - - key: positively correlated with - source: GO:0004197 - target: MESH:D014779 - - key: positively correlated with - source: GO:0004252 - target: MESH:D014779 - - key: positively correlated with - source: MESH:D014779 - target: MESH:D019065 - - key: in taxon - source: GO:0039694 - target: NCBITaxon:11103 - - key: in taxon - source: MESH:D019065 - target: NCBITaxon:11103 - - key: causes - source: NCBITaxon:11103 - target: MESH:D019698 - multigraph: true - nodes: - - id: MESH:C000604171 - label: Drug - name: velpatasvir - - id: UniProt:Q5L478 - label: Protein - name: Nonstructural protein 5A - - id: GO:0003968 - label: MolecularActivity - name: RNA-directed 5'-3' RNA polymerase activity - - id: GO:0039694 - label: BiologicalProcess - name: viral RNA genome replication - - id: MESH:C000618292 - label: Protein - name: PI4KIIIalpha protein, human - - id: MESH:C037178 - label: ChemicalSubstance - name: phosphatidylinositol 4-phosphate - - id: MESH:D002784 - label: ChemicalSubstance - name: Cholesterol - - id: MESH:D000086969 - label: CellularComponent - name: Viral Replication Compartments - - id: GO:0004197 - label: MolecularActivity - name: cysteine-type endopeptidase activity - - id: GO:0004252 - label: MolecularActivity - name: serine-type endopeptidase activity - - id: MESH:D014779 - label: BiologicalProcess - name: Virus Replication - - id: MESH:D019065 - label: BiologicalProcess - name: Virus Assembly - - id: NCBITaxon:11103 - label: OrganismTaxon - name: Hepacivirus C - - id: MESH:D019698 - label: Disease - name: Chronic hepatitis C - reference: - - https://go.drugbank.com/drugs/DB11613 - - https://en.wikipedia.org/wiki/Velpatasvir#Mechanism_of_action - - https://en.wikipedia.org/wiki/Discovery_and_development_of_NS5A_inhibitors#Mechanism_of_action - - https://en.wikipedia.org/wiki/Discovery_and_development_of_NS5A_inhibitors#Function - - https://pubmed.ncbi.nlm.nih.gov/25384189/ - - https://www.ncbi.nlm.nih.gov/books/NBK1623/ -- directed: true - graph: - disease: Scarlet fever - disease_mesh: MESH:D012541 - drug: benzathine benzylpenicillin - drug_mesh: MESH:D010401 - drugbank: DB:DB01053 - links: - - key: negatively regulates - source: MESH:D010401 - target: InterPro:IPR001460 - - key: positively correlated with - source: InterPro:IPR001460 - target: GO:0009252 - - key: positively correlated with - source: GO:0009252 - target: GO:0071555 - - key: in taxon - source: GO:0071555 - target: NCBITaxon:1314 - - key: causes - source: NCBITaxon:1314 - target: MESH:D012541 - multigraph: true - nodes: - - id: MESH:D010401 - label: Drug - name: benzathine benzylpenicillin - alt_names: - - Penicillin G Benzathine - - Benzylpenicillin - - Benzylpenicillin benzathine hydrate - alt_ids: - - DB:DBSALT002768 - - id: InterPro:IPR001460 - label: GeneFamily - name: Penicillin-binding protein, transpeptidase - - id: GO:0009252 - label: BiologicalProcess - name: peptidoglycan biosynthetic process - - id: GO:0071555 - label: BiologicalProcess - name: cell wall organization - - id: NCBITaxon:1314 - label: OrganismTaxon - name: Streptococcus pyogenes - - id: MESH:D012541 - label: Disease - name: Scarlet fever - reference: https://go.drugbank.com/drugs/DB01053 -- directed: true - graph: - disease: Streptococcus pyogenes infection - disease_mesh: MESH:D013290 - drug: benzathine benzylpenicillin - drug_mesh: MESH:D010401 - drugbank: DB:DB01053 - links: - - key: negatively regulates - source: MESH:D010401 - target: InterPro:IPR001460 - - key: positively correlated with - source: InterPro:IPR001460 - target: GO:0009252 - - key: positively correlated with - source: GO:0009252 - target: GO:0071555 - - key: in taxon - source: GO:0071555 - target: NCBITaxon:1314 - - key: causes - source: NCBITaxon:1314 - target: MESH:D013290 - multigraph: true - nodes: - - id: MESH:D010401 - label: Drug - name: benzathine benzylpenicillin - alt_names: - - Penicillin G Benzathine - - Benzylpenicillin - - Benzylpenicillin benzathine hydrate - alt_ids: - - DB:DBSALT002768 - - id: InterPro:IPR001460 - label: GeneFamily - name: Penicillin-binding protein, transpeptidase - - id: GO:0009252 - label: BiologicalProcess - name: peptidoglycan biosynthetic process - - id: GO:0071555 - label: BiologicalProcess - name: cell wall organization - - id: NCBITaxon:1314 - label: OrganismTaxon - name: Streptococcus pyogenes - - id: MESH:D013290 - label: Disease - name: Streptococcus pyogenes infection - reference: https://go.drugbank.com/drugs/DB01053 -- directed: true - graph: - disease: Erysipelas - disease_mesh: MESH:D004886 - drug: benzathine benzylpenicillin - drug_mesh: MESH:D010401 - drugbank: DB:DB01053 - links: - - key: negatively regulates - source: MESH:D010401 - target: InterPro:IPR001460 - - key: positively correlated with - source: InterPro:IPR001460 - target: GO:0009252 - - key: positively correlated with - source: GO:0009252 - target: GO:0071555 - - key: in taxon - source: GO:0071555 - target: NCBITaxon:1314 - - key: causes - source: NCBITaxon:1314 - target: MESH:D004886 - multigraph: true - nodes: - - id: MESH:D010401 - label: Drug - name: benzathine benzylpenicillin - alt_names: - - Penicillin G Benzathine - - Benzylpenicillin - - Benzylpenicillin benzathine hydrate - alt_ids: - - DB:DBSALT002768 - - id: InterPro:IPR001460 - label: GeneFamily - name: Penicillin-binding protein, transpeptidase - - id: GO:0009252 - label: BiologicalProcess - name: peptidoglycan biosynthetic process - - id: GO:0071555 - label: BiologicalProcess - name: cell wall organization - - id: NCBITaxon:1314 - label: OrganismTaxon - name: Streptococcus pyogenes - - id: MESH:D004886 - label: Disease - name: Erysipelas - reference: https://go.drugbank.com/drugs/DB01053 -- directed: true - graph: - disease: Pneumococcal pneumonia - disease_mesh: MESH:D011018 - drug: benzathine benzylpenicillin - drug_mesh: MESH:D010401 - drugbank: DB:DB01053 - links: - - key: negatively regulates - source: MESH:D010401 - target: InterPro:IPR001460 - - key: positively correlated with - source: InterPro:IPR001460 - target: GO:0009252 - - key: positively correlated with - source: GO:0009252 - target: GO:0071555 - - key: in taxon - source: GO:0071555 - target: NCBITaxon:1313 - - key: causes - source: NCBITaxon:1313 - target: MESH:D011018 - multigraph: true - nodes: - - id: MESH:D010401 - label: Drug - name: benzathine benzylpenicillin - alt_names: - - Penicillin G Benzathine - - Benzylpenicillin - - Benzylpenicillin benzathine hydrate - alt_ids: - - DB:DBSALT002768 - - id: InterPro:IPR001460 - label: GeneFamily - name: Penicillin-binding protein, transpeptidase - - id: GO:0009252 - label: BiologicalProcess - name: peptidoglycan biosynthetic process - - id: GO:0071555 - label: BiologicalProcess - name: cell wall organization - - id: NCBITaxon:1313 - label: OrganismTaxon - name: Streptococcus pneumoniae - - id: MESH:D011018 - label: Disease - name: Pneumococcal pneumonia - reference: https://go.drugbank.com/drugs/DB01053 -- directed: true - graph: - disease: Non-small cell lung cancer - disease_mesh: MESH:D002289 - drug: ceritinib - drug_mesh: MESH:C586847 - drugbank: DB:DB09063 - links: - - key: decreases activity of - source: MESH:C586847 - target: UniProt:Q9UM73 - - key: positively regulates - source: UniProt:Q9UM73 - target: GO:0008283 - - key: positively correlated with - source: GO:0008283 - target: MESH:D002289 - multigraph: true - nodes: - - id: MESH:C586847 - label: Drug - name: ceritinib - - id: UniProt:Q9UM73 - label: Protein - name: ALK tyrosine kinase receptor - - id: GO:0008283 - label: BiologicalProcess - name: cell population proliferation - - id: MESH:D002289 - label: Disease - name: Non-small cell lung cancer - reference: - - https://go.drugbank.com/drugs/DB09063 - - https://en.wikipedia.org/wiki/Ceritinib#Mechanism_of_action -- directed: true - graph: - disease: Ocular hypertension - disease_mesh: MESH:D009798 - drug: dorzolamide - drug_mesh: MESH:C062765 - drugbank: DB:DB00869 - links: - - key: negatively regulates - source: MESH:C062765 - target: UniProt:P00918 - - key: positively regulates - source: UniProt:P00918 - target: GO:0015701 - - key: increases abundance of - source: GO:0015701 - target: UBERON:0001796 - - key: positively correlated with - source: UBERON:0001796 - target: MESH:D009798 - multigraph: true - nodes: - - id: MESH:C062765 - label: Drug - name: dorzolamide - - id: UniProt:P00918 - label: Protein - name: Carbonic anhydrase 2 - - id: GO:0015701 - label: BiologicalProcess - name: bicarbonate transport - - id: UBERON:0001796 - label: GrossAnatomicalStructure - name: aqueous humor of eyeball - - id: MESH:D009798 - label: Disease - name: Ocular hypertension - reference: - - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL218490/ - - https://pubchem.ncbi.nlm.nih.gov/compound/5284549#section=Mechanism-of-Action - - https://en.wikipedia.org/wiki/Glaucoma#Medication - - https://www.aaopt.org/docs/knowledge-base/outline26514.doc?sfvrsn=5f863d3_0 - - https://en.wikipedia.org/wiki/Aqueous_humour#Clinical_significance -- directed: true - graph: - disease: Open-angle glaucoma - disease_mesh: MESH:D005902 - drug: dorzolamide - drug_mesh: MESH:C062765 - drugbank: DB:DB00869 - links: - - key: negatively regulates - source: MESH:C062765 - target: UniProt:P00918 - - key: positively regulates - source: UniProt:P00918 - target: GO:0015701 - - key: increases abundance of - source: GO:0015701 - target: UBERON:0001796 - - key: positively correlated with - source: UBERON:0001796 - target: HP:0007906 - - key: manifestation of - source: HP:0007906 - target: MESH:D005902 - multigraph: true - nodes: - - id: MESH:C062765 - label: Drug - name: dorzolamide - - id: UniProt:P00918 - label: Protein - name: Carbonic anhydrase 2 - - id: GO:0015701 - label: BiologicalProcess - name: bicarbonate transport - - id: UBERON:0001796 - label: GrossAnatomicalStructure - name: aqueous humor of eyeball - - id: HP:0007906 - label: PhenotypicFeature - name: Ocular Hypertension - - id: MESH:D005902 - label: Disease - name: Open-angle glaucoma - reference: - - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL218490/ - - https://pubchem.ncbi.nlm.nih.gov/compound/5284549#section=Mechanism-of-Action - - https://en.wikipedia.org/wiki/Glaucoma#Medication - - https://www.aaopt.org/docs/knowledge-base/outline26514.doc?sfvrsn=5f863d3_0 - - https://en.wikipedia.org/wiki/Aqueous_humour#Clinical_significance -- directed: true - graph: - disease: Cardiogenic shock - disease_mesh: MESH:D012770 - drug: dobutamine - drug_mesh: MESH:D004280 - drugbank: DB:DB00841 - links: - - key: positively regulates - source: MESH:D004280 - target: UniProt:P08588 - - key: positively regulates - source: UniProt:P08588 - target: GO:0060047 - - key: negatively correlated with - source: GO:0060047 - target: HP:0002615 - - key: manifestation of - source: HP:0002615 - target: MESH:D012770 - multigraph: true - nodes: - - id: MESH:D004280 - label: Drug - name: dobutamine - - id: UniProt:P08588 - label: Protein - name: Beta-1 adrenergic receptor - - id: GO:0060047 - label: BiologicalProcess - name: heart contraction - - id: HP:0002615 - label: PhenotypicFeature - name: Hypotension - - id: MESH:D012770 - label: Disease - name: Cardiogenic shock - reference: - - https://pubchem.ncbi.nlm.nih.gov/compound/36811#section=Mechanism-of-Action - - https://en.wikipedia.org/wiki/Dobutamine#Pharmacology - - https://go.drugbank.com/drugs/DB00841#BE0000172 - - https://en.wikipedia.org/wiki/Cardiogenic_shock#Signs_and_symptoms -- directed: true - graph: - disease: Tenosynovitis - disease_mesh: MESH:D013717 - drug: indomethacin - drug_mesh: MESH:D007213 - drugbank: DB:DB00328 - links: - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P23219 - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P35354 - - key: participates in - source: UniProt:P23219 - target: REACT:R-HSA-2162123 - - key: participates in - source: UniProt:P35354 - target: REACT:R-HSA-2162123 - - key: increases abundance of - source: REACT:R-HSA-2162123 - target: CHEBI:26333 - - key: positively correlated with - source: CHEBI:26333 - target: GO:0006954 - - key: positively correlated with - source: GO:0006954 - target: MESH:D013717 - multigraph: true - nodes: - - id: MESH:D007213 - label: Drug - name: indomethacin - - id: UniProt:P23219 - label: Protein - name: Prostaglandin G/H synthase 1 - - id: UniProt:P35354 - label: Protein - name: Prostaglandin G/H synthase 2 - - id: REACT:R-HSA-2162123 - label: Pathway - name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) - - id: CHEBI:26333 - label: ChemicalSubstance - name: prostaglandin - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: MESH:D013717 - label: Disease - name: Tenosynovitis - reference: https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ -- directed: true - graph: - disease: Bursitis - disease_mesh: MESH:D002062 - drug: indomethacin - drug_mesh: MESH:D007213 - drugbank: DB:DB00328 - links: - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P23219 - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P35354 - - key: participates in - source: UniProt:P23219 - target: REACT:R-HSA-2162123 - - key: participates in - source: UniProt:P35354 - target: REACT:R-HSA-2162123 - - key: increases abundance of - source: REACT:R-HSA-2162123 - target: CHEBI:26333 - - key: positively correlated with - source: CHEBI:26333 - target: GO:0006954 - - key: positively correlated with - source: GO:0006954 - target: MESH:D002062 - multigraph: true - nodes: - - id: MESH:D007213 - label: Drug - name: indomethacin - - id: UniProt:P23219 - label: Protein - name: Prostaglandin G/H synthase 1 - - id: UniProt:P35354 - label: Protein - name: Prostaglandin G/H synthase 2 - - id: REACT:R-HSA-2162123 - label: Pathway - name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) - - id: CHEBI:26333 - label: ChemicalSubstance - name: prostaglandin - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: MESH:D002062 - label: Disease - name: Bursitis - reference: https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ -- directed: true - graph: - disease: Rheumatoid arthritis - disease_mesh: MESH:D001172 - drug: indomethacin - drug_mesh: MESH:D007213 - drugbank: DB:DB00328 - links: - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P23219 - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P35354 - - key: participates in - source: UniProt:P23219 - target: REACT:R-HSA-2162123 - - key: participates in - source: UniProt:P35354 - target: REACT:R-HSA-2162123 - - key: increases abundance of - source: REACT:R-HSA-2162123 - target: CHEBI:26333 - - key: positively correlated with - source: CHEBI:26333 - target: GO:0006954 - - key: positively correlated with - source: GO:0006954 - target: MESH:D001172 - multigraph: true - nodes: - - id: MESH:D007213 - label: Drug - name: indomethacin - - id: UniProt:P23219 - label: Protein - name: Prostaglandin G/H synthase 1 - - id: UniProt:P35354 - label: Protein - name: Prostaglandin G/H synthase 2 - - id: REACT:R-HSA-2162123 - label: Pathway - name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) - - id: CHEBI:26333 - label: ChemicalSubstance - name: prostaglandin - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: MESH:D001172 - label: Disease - name: Rheumatoid arthritis - reference: https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ -- directed: true - graph: - disease: Ankylosing spondylitis - disease_mesh: MESH:D013167 - drug: indomethacin - drug_mesh: MESH:D007213 - drugbank: DB:DB00328 - links: - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P23219 - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P35354 - - key: participates in - source: UniProt:P23219 - target: REACT:R-HSA-2162123 - - key: participates in - source: UniProt:P35354 - target: REACT:R-HSA-2162123 - - key: increases abundance of - source: REACT:R-HSA-2162123 - target: CHEBI:26333 - - key: positively correlated with - source: CHEBI:26333 - target: GO:0006954 - - key: positively correlated with - source: GO:0006954 - target: MESH:D013167 - multigraph: true - nodes: - - id: MESH:D007213 - label: Drug - name: indomethacin - - id: UniProt:P23219 - label: Protein - name: Prostaglandin G/H synthase 1 - - id: UniProt:P35354 - label: Protein - name: Prostaglandin G/H synthase 2 - - id: REACT:R-HSA-2162123 - label: Pathway - name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) - - id: CHEBI:26333 - label: ChemicalSubstance - name: prostaglandin - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: MESH:D013167 - label: Disease - name: Ankylosing spondylitis - reference: https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ -- directed: true - graph: - disease: Gout - disease_mesh: MESH:D006073 - drug: indomethacin - drug_mesh: MESH:D007213 - drugbank: DB:DB00328 - links: - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P23219 - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P35354 - - key: participates in - source: UniProt:P23219 - target: REACT:R-HSA-2162123 - - key: participates in - source: UniProt:P35354 - target: REACT:R-HSA-2162123 - - key: increases abundance of - source: REACT:R-HSA-2162123 - target: CHEBI:26333 - - key: positively correlated with - source: CHEBI:26333 - target: GO:0006954 - - key: positively correlated with - source: GO:0006954 - target: MESH:D006073 - multigraph: true - nodes: - - id: MESH:D007213 - label: Drug - name: indomethacin - - id: UniProt:P23219 - label: Protein - name: Prostaglandin G/H synthase 1 - - id: UniProt:P35354 - label: Protein - name: Prostaglandin G/H synthase 2 - - id: REACT:R-HSA-2162123 - label: Pathway - name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) - - id: CHEBI:26333 - label: ChemicalSubstance - name: prostaglandin - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: MESH:D006073 - label: Disease - name: Gout - reference: https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ -- directed: true - graph: - disease: Tendinitis - disease_mesh: MESH:D052256 - drug: indomethacin - drug_mesh: MESH:D007213 - drugbank: DB:DB00328 - links: - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P23219 - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P35354 - - key: participates in - source: UniProt:P23219 - target: REACT:R-HSA-2162123 - - key: participates in - source: UniProt:P35354 - target: REACT:R-HSA-2162123 - - key: increases abundance of - source: REACT:R-HSA-2162123 - target: CHEBI:26333 - - key: positively correlated with - source: CHEBI:26333 - target: GO:0006954 - - key: positively correlated with - source: GO:0006954 - target: MESH:D052256 - multigraph: true - nodes: - - id: MESH:D007213 - label: Drug - name: indomethacin - - id: UniProt:P23219 - label: Protein - name: Prostaglandin G/H synthase 1 - - id: UniProt:P35354 - label: Protein - name: Prostaglandin G/H synthase 2 - - id: REACT:R-HSA-2162123 - label: Pathway - name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) - - id: CHEBI:26333 - label: ChemicalSubstance - name: prostaglandin - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: MESH:D052256 - label: Disease - name: Tendinitis - reference: https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ -- directed: true - graph: - disease: Synovitis - disease_mesh: MESH:D013585 - drug: indomethacin - drug_mesh: MESH:D007213 - drugbank: DB:DB00328 - links: - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P23219 - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P35354 - - key: participates in - source: UniProt:P23219 - target: REACT:R-HSA-2162123 - - key: participates in - source: UniProt:P35354 - target: REACT:R-HSA-2162123 - - key: increases abundance of - source: REACT:R-HSA-2162123 - target: CHEBI:26333 - - key: positively correlated with - source: CHEBI:26333 - target: GO:0006954 - - key: positively correlated with - source: GO:0006954 - target: MESH:D013585 - multigraph: true - nodes: - - id: MESH:D007213 - label: Drug - name: indomethacin - - id: UniProt:P23219 - label: Protein - name: Prostaglandin G/H synthase 1 - - id: UniProt:P35354 - label: Protein - name: Prostaglandin G/H synthase 2 - - id: REACT:R-HSA-2162123 - label: Pathway - name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) - - id: CHEBI:26333 - label: ChemicalSubstance - name: prostaglandin - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: MESH:D013585 - label: Disease - name: Synovitis - reference: https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ -- directed: true - graph: - disease: Osteoarthritis - disease_mesh: MESH:D010003 - drug: indomethacin - drug_mesh: MESH:D007213 - drugbank: DB:DB00328 - links: - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P23219 - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P35354 - - key: participates in - source: UniProt:P23219 - target: REACT:R-HSA-2162123 - - key: participates in - source: UniProt:P35354 - target: REACT:R-HSA-2162123 - - key: increases abundance of - source: REACT:R-HSA-2162123 - target: CHEBI:26333 - - key: positively correlated with - source: CHEBI:26333 - target: GO:0006954 - - key: positively correlated with - source: GO:0006954 - target: MESH:D010003 - multigraph: true - nodes: - - id: MESH:D007213 - label: Drug - name: indomethacin - - id: UniProt:P23219 - label: Protein - name: Prostaglandin G/H synthase 1 - - id: UniProt:P35354 - label: Protein - name: Prostaglandin G/H synthase 2 - - id: REACT:R-HSA-2162123 - label: Pathway - name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) - - id: CHEBI:26333 - label: ChemicalSubstance - name: prostaglandin - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: MESH:D010003 - label: Disease - name: Osteoarthritis - reference: https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ -- directed: true - graph: - disease: Patent ductus arteriosus - disease_mesh: MESH:D004374 - drug: indomethacin - drug_mesh: MESH:D007213 - drugbank: DB:DB00328 - links: - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P23219 - - key: negatively regulates - source: MESH:D007213 - target: UniProt:P35354 - - key: participates in - source: UniProt:P23219 - target: REACT:R-HSA-2162123 - - key: participates in - source: UniProt:P35354 - target: REACT:R-HSA-2162123 - - key: increases abundance of - source: REACT:R-HSA-2162123 - target: CHEBI:26333 - - key: negatively correlated with - source: CHEBI:26333 - target: GO:0097070 - - key: negatively correlated with - source: GO:0097070 - target: MESH:D004374 - multigraph: true - nodes: - - id: MESH:D007213 - label: Drug - name: indomethacin - - id: UniProt:P23219 - label: Protein - name: Prostaglandin G/H synthase 1 - - id: UniProt:P35354 - label: Protein - name: Prostaglandin G/H synthase 2 - - id: REACT:R-HSA-2162123 - label: Pathway - name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) - - id: CHEBI:26333 - label: ChemicalSubstance - name: prostaglandin - - id: GO:0097070 - label: BiologicalProcess - name: ductus arteriosus closure - - id: MESH:D004374 - label: Disease - name: Patent ductus arteriosus - reference: - - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL6/ - - https://en.wikipedia.org/wiki/Patent_ductus_arteriosus#Prostaglandin_inhibitors -- directed: true - graph: - disease: Lennox-Gastaut syndrome - disease_mesh: MESH:D065768 - drug: clobazam - drug_mesh: MESH:C012255 - drugbank: DB:DB00349 - links: - - key: increases activity of - source: MESH:C012255 - target: InterPro:IPR006028 - - key: positively regulates - source: InterPro:IPR006028 - target: GO:0051932 - - key: negatively correlated with - source: GO:0051932 - target: HP:0032792 - - key: manifestation of - source: HP:0032792 - target: MESH:D065768 - multigraph: true - nodes: - - id: MESH:C012255 - label: Drug - name: clobazam - - id: InterPro:IPR006028 - label: GeneFamily - name: Gamma-aminobutyric acid A receptor/Glycine receptor alpha - - id: GO:0051932 - label: BiologicalProcess - name: synaptic transmission, GABAergic - - id: HP:0032792 - label: PhenotypicFeature - name: Tonic seizure - - id: MESH:D065768 - label: Disease - name: Lennox-Gastaut syndrome - reference: - - https://go.drugbank.com/drugs/DB00349 - - https://www.ebi.ac.uk/chembl/compound_report_card/CHEMBL70418/ - - https://en.wikipedia.org/wiki/Clobazam#Pharmacology -- directed: true - graph: - disease: Rheumatism - disease_mesh: MESH:D012216 - drug: acemetacin - drug_mesh: MESH:C026784 - drugbank: DB:DB13783 - links: - - key: has metabolite - source: MESH:C026784 - target: DB:DB00328 - - key: negatively regulates - source: DB:DB00328 - target: UniProt:P35354 - - key: negatively regulates - source: DB:DB00328 - target: UniProt:P23219 - - key: participates in - source: UniProt:P23219 - target: REACT:R-HSA-2162123 - - key: participates in - source: UniProt:P35354 - target: REACT:R-HSA-2162123 - - key: increases abundance of - source: REACT:R-HSA-2162123 - target: CHEBI:26333 - - key: negatively correlated with - source: CHEBI:26333 - target: GO:0006954 - - key: negatively correlated with - source: GO:0006954 - target: MESH:D012216 - multigraph: true - nodes: - - id: MESH:C026784 - label: Drug - name: acemetacin - alt_ids: - - MESH:C519896 - alt_names: - - acemethacin - - id: DB:DB00328 - label: ChemicalSubstance - name: Indomethacin - - id: UniProt:P23219 - label: Protein - name: Prostaglandin G/H synthase 1 - - id: UniProt:P35354 - label: Protein - name: Prostaglandin G/H synthase 2 - - id: REACT:R-HSA-2162123 - label: Pathway - name: Synthesis of Prostaglandins (PG) and Thromboxanes (TX) - - id: CHEBI:26333 - label: ChemicalSubstance - name: prostaglandin - - id: GO:0006954 - label: BiologicalProcess - name: inflammatory response - - id: MESH:D012216 - label: Disease - name: Rheumatism - reference: https://go.drugbank.com/drugs/DB13783