diff --git a/MSMAll/README.md b/MSMAll/README.md index 45f51efaa..d50afd7d4 100644 --- a/MSMAll/README.md +++ b/MSMAll/README.md @@ -1,6 +1,6 @@ # HCP Pipelines MSMAll subdirectory - +MSMAll is a tool for surface-based functional alignment. It uses T1w/T2w myelin maps, resting state network maps, and resting-state-based visuotopic maps to align a subject's cortical data to a group template. One runs MSMAll after running either sICA+FIX (single run or multi-run). One first runs the MSMAll Pipeline, then the DeDriftAndResample Pipeline with or without the GroupAverageDeDrift Pipeline depending upon whether one is creating a new template space (compute a DeDrift) or simply aligning data to an existing template (don't compute a DeDrift). # Notes on MATLAB usage