Where does real_bias file get created?

[mharms]

HCPpipelines/RestingStateStats/RestingStateStats.sh

Line 949 in 1f89abc

g_bc_mode="${ResultsFolder}/${g_fmri_name}_Atlas${RegString}_real_bias.dscalar.nii"

Is the "real_bias" file created by any of the script currently in the repo?

[glasserm]

No this file is only relevant for HCP-YA data with a legacy bias correction that requires updating to a new bias correction.

[mharms]

But how did that file get created? i.e., what if someone else used the "legacy" bias correction and wanted to update ?

[glasserm]

Perhaps that code should get committed. I am in the process of running it all on the HCP-YA data...

[glasserm]

Lets hold off on committing until Tim's rewrite of weighted regression is closer to completion so that we know if any changes are needed.