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jupyter-julia.def
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BootStrap: docker
From: nvidia/cuda:10.0-cudnn7-devel-ubuntu18.04
%help
Julia 1.3 docker image with cuda & cudnn
Julia Dockerfile: https://github.com/docker-library/julia/blob/master/1.1/stretch/Dockerfile
#---------------------------------------------------------------------
%labels
#---------------------------------------------------------------------
MAINTAINER Jongsu Kim
#---------------------------------------------------------------------
%environment
#---------------------------------------------------------------------
export PATH=/bin:/usr/bin:/usr/local/bin
export JULIA_PATH=/usr/local/julia
export JULIA_BINDIR=$JULIA_PATH/bin
export HDF5_DIR=/usr/lib/x86_64-linux-gnu/hdf5/serial/
export PATH=$JULIA_PATH/bin:$PATH
export CUDA_PATH=/usr/local/cuda
export PATH=$CUDA_PATH/bin:$PATH
export LD_LIBRARY_PATH=$CUDA_PATH/lib64:/usr/lib/x86_64-linux-gnu:/lib:/lib64
export DISPLAY=:1
unset XDG_RUNTIME_DIR
/usr/bin/X $DISPLAY -quiet > /dev/null 2>&1 &
#---------------------------------------------------------------------
%post
#---------------------------------------------------------------------
export DEBIAN_FRONTEND=noninteractive
export JULIA_PATH=/usr/local/julia
export PATH=$JULIA_PATH/bin:$PATH
export JULIA_GPG=3673DF529D9049477F76B37566E3C7DC03D6E495
export JULIA_VERSION=1.3.0
# apt packages
# select mirror
apt-get update
apt-get install -y software-properties-common
add-apt-repository universe
add-apt-repository ppa:inkscape.dev/stable
apt-get update
apt-get install -y --no-install-recommends python3-dev python3-pip python3-setuptools python3-wheel
pip3 install --upgrade pip
python3 -m pip install --upgrade setuptools wheel
python3 -m pip install apt-mirror-updater
# disable mirror selector
# apt-mirror-updater --auto-change-mirror
# update and install packages
apt-get update
apt-get install -y --no-install-recommends locales tzdata
apt-get install -y --no-install-recommends ca-certificates curl gnupg dirmngr
# HDF5
apt-get install -y --no-install-recommends libhdf5-dev hdf5-tools
# Xdummy for headless system
apt-get install -y xserver-xorg-video-dummy
# Plots.jl dependencies
curl -fL -o xorg.conf "http://xpra.org/xorg.conf"
mv xorg.conf /etc/X11/xorg.conf
apt-get install -y libxt6 libxrender1 libxext6 libgl1-mesa-glx libqt5widgets5
#apt-get install -y --no-install-recommends gettext gettext-base
#apt-get install -y --no-install-recommends libharfbuzz libharfbuzz-subject libharfbuzz-gobject
# Install korean fonts
apt-get install -y fonts-nanum fonts-nanum-coding fonts-nanum-extra
apt-get install -y fonts-noto fonts-noto-cjk
# install python package
python3 -m pip install numpy scipy matplotlib sympy
# jupyter
python3 -m pip install jupyter RISE jupyter_contrib_nbextensions
# install node & IJavascript
#apt-get install -y curl
#curl -sL https://deb.nodesource.com/setup_10.x | bash -
#apt-get install -y nodejs
#npm install -g ijavascript
#ijsinstall
set -eux; \
savedAptMark="$(apt-mark showmanual)"; \
if ! command -v gpg > /dev/null; then \
apt-get update; \
apt-get install -y --no-install-recommends \
gnupg \
dirmngr \
; \
rm -rf /var/lib/apt/lists/*; \
fi; \
apt-get clean
# locales
locale-gen --purge en_US.UTF-8
#echo "LC_ALL=en_US.UTF-8" >> /etc/environment
#echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
#echo "LANG=en_US.UTF-8" > /etc/locale.conf
#locale-gen en_US.UTF-8
echo -e 'LANG="en_US.UTF-8"\nLANGUAGE="en_US:en"\n' > /etc/default/locale
dpkg-reconfigure locales
# TZ
export TZ="Asia/Seoul"
ln -snf /usr/share/zoneinfo/${TZ} /etc/localtime
echo ${TZ} > /etc/timezone
dpkg-reconfigure tzdata --frontend noninteractive tzdata
# install julia
# https://julialang.org/downloads/#julia-command-line-version
# https://julialang-s3.julialang.org/bin/checksums/julia-1.3.0.sha256
# this "case" statement is generated via "update.sh"
dpkgArch="$(dpkg --print-architecture)"; \
case "${dpkgArch##*-}" in \
# amd64
amd64) tarArch='x86_64'; dirArch='x64'; sha256='9ec9e8076f65bef9ba1fb3c58037743c5abb3b53d845b827e44a37e7bcacffe8' ;; \
# arm32v7
armhf) tarArch='armv7l'; dirArch='armv7l'; sha256='7739a318f371250faf10befd5636008fbb84992cc90ee88b3a753b1ad408ad7c' ;; \
# arm64v8
arm64) tarArch='aarch64'; dirArch='aarch64'; sha256='8557c86cb4f65e8d8c2b1da376e759548cb35942a63820a6d20bc1448c45ec1b' ;; \
# i386
i386) tarArch='i686'; dirArch='x86'; sha256='e43339e72b2e71f8df343e6f542bf3a48cbbf7e9c135b076d5d651d9153615c9' ;; \
*) echo >&2 "error: current architecture ($dpkgArch) does not have a corresponding Julia binary release"; exit 1 ;; \
esac; \
\
folder="$(echo "$JULIA_VERSION" | cut -d. -f1-2)"; \
curl -fL -o julia.tar.gz.asc "https://julialang-s3.julialang.org/bin/linux/${dirArch}/${folder}/julia-${JULIA_VERSION}-linux-${tarArch}.tar.gz.asc"; \
curl -fL -o julia.tar.gz "https://julialang-s3.julialang.org/bin/linux/${dirArch}/${folder}/julia-${JULIA_VERSION}-linux-${tarArch}.tar.gz"; \
\
echo "${sha256} *julia.tar.gz" | sha256sum -c -; \
\
export GNUPGHOME="$(mktemp -d)"; \
#gpg --batch --keyserver na.pool.sks-keyservers.net --recv-keys "$JULIA_GPG"; \
#gpg --batch --verify julia.tar.gz.asc julia.tar.gz; \
command -v gpgconf > /dev/null && gpgconf --kill all; \
rm -rf "$GNUPGHOME" julia.tar.gz.asc; \
\
mkdir "$JULIA_PATH"; \
tar -xzf julia.tar.gz -C "$JULIA_PATH" --strip-components 1; \
rm julia.tar.gz; \
\
apt-mark auto '.*' > /dev/null; \
[ -z "$savedAptMark" ] || apt-mark manual $savedAptMark; \
apt-get purge -y --auto-remove -o APT::AutoRemove::RecommendsImportant=false; \
\
# smoke test
julia --version
# create some generic mount points
mkdir -p /mnt/data /mnt/input /mnt/output /mnt/ref /mnt/code /mnt/work