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README.Rmd
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---
output: github_document
---
<!-- README.md is generated from README.Rmd. Please edit that file -->
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
library(icons)
library(ggplot2)
if (!"tmap" %in% installed.packages()) {install.packages("tmap")}
source("update.R")
```
<!-- badges: start -->
[](https://github.com/archmetalDBM/GlobaLID-App)
[](https://www.gnu.org/licenses/gpl-3.0)
<!-- badges: end -->
# GlobaLID App <img src="www/logo.svg" align="right" width="120" />
Here you can find the source code of the GlobaLID web app.
# What is GlobaLID?
GlobaLID is a Global Lead Isotope Database and aims to facilitate the reconstruction of raw material provenances with lead isotopes, especially in archaeology. The app provides direct access to and convenient interaction with the [GlobaLID database](https://doi.org/10.5880/fidgeo.2023.043). You can filter the database according to your research question, upload own data to compare it with GlobaLID, and produce and download publication ready plots. Watch our [video tutorial](https://www.youtube.com/watch?v=qwKStMc-068) to learn more! Visit [our webpage](https://archmetaldbm.github.io/Globalid/) to learn more about the GlobaLID project and to get the latest news.
The current version of the GlobaLID database includes data from these locations:
```{r map, echo=FALSE, fig.width=10}
data("World", package = "tmap") # load worldmap from package tmap
GlobaLID <- subset(readRDS("data/database_complete.rds"), select = c("Longitude","Latitude"))
ggplot() +
geom_sf(data = World, fill = "white", size = .25) +
geom_point(data = GlobaLID, aes(x = Longitude, y = Latitude), size = 0.25, color = "red", shape = 16, alpha = 0.75) +
scale_x_continuous(expand = c(0,0)) +
scale_y_continuous(expand = c(0,0)) +
theme_void() +
theme(panel.background = element_rect(fill = alpha("darkblue", 0.1), color = NA),
legend.box.background = element_rect(fill = "white", color = NA))
```
# How to cite
If you use the GlobaLID app, please cite it as:
* GlobaLID Core Team. (2021). GlobaLID web application V. `r app_version`, database status: `r format.Date(update_database, "%F")`. [https://globalid.dmt-lb.de/](https://globalid.dmt-lb.de/)
* Klein, S., Rose, T., Westner, K. J., & Hsu, Y.-K. (2022). From OXALID to GlobaLID: Introducing a modern and FAIR lead isotope database with an interactive application. Archaeometry 64(4), 935–950. [https://doi.org/10.1111/arcm.12762](https://doi.org/10.1111/arcm.12762)
```
@misc{GlobaLIDCoreTeam.2022,
author = {{GlobaLID Core Team}},
year = {2022},
title = {{GlobaLID web application V. `r app_version`, database status: `r format.Date(update_database, "%F")`}},
url = {https://globalid.dmt-lb.de/}
}
@article{Klein.2022,
author = {Klein, Sabine and Rose, Thomas and Westner, Katrin J. and Hsu, Yiu-Kang},
title = {From OXALID to GlobaLID: Introducing a modern and FAIR lead isotope database with an interactive application},
journal = {Archaeometry},
volume = {64},
number = {4},
pages = {935-950},
doi = {https://doi.org/10.1111/arcm.12762},
}
```
# Join the team!
GlobaLID needs your help to grow and to provide high quality datasets! The core team is permanently reviewing and adding new and old data from the literature to keep GlobaLID growing. However, we are neither proficient enough with the geology and geography of all parts of the world nor do we know all publications with lead isotope data from ores and minerals. Hence we are happy about any support from our community. Interested? Write us!
# Team
## Project team
* [Sabine Klein](https://www.bergbaumuseum.de/en/museum/mitarbeitende/kontakt-detailseite/prof-dr-sabine-klein) [](https://orcid.org/0000-0002-3939-4428) (Forschungsbereich Archäometallurgie, Leibniz-Forschungsmuseum für Georessourcen/Deutsches Bergbau-Museum Bochum, Bochum, Germany; Institut für Archäologische Wissenschaften, Ruhr-Universität Bochum, Bochum, Germany; FIERCE, Frankfurt Isotope & Element Research Centre, Goethe Universität, Frankfurt am Main, Germany)
* Helge Wiethoff (Rechenzentrum, Technische Hochschule Georg Agricola, Bochum, Germany)
* [Thomas Rose](https://copper-smelting.com/) [](https://orcid.org/0000-0002-8186-3566) (Forschungsbereich Archäometallurgie, Leibniz-Forschungsmuseum für Georessourcen/Deutsches Bergbau-Museum Bochum, Bochum, Germany)
* [Tim Greifelt](https://www.bergbaumuseum.de/museum/mitarbeitende/kontakt-detailseite/tim-greifelt) [](https://orcid.org/0009-0007-9701-8547) (Forschungsbereich Archäometallurgie, Leibniz-Forschungsmuseum für Georessourcen/Deutsches Bergbau-Museum Bochum, Bochum, Germany)
* [Katrin J. Westner](https://www.bergbaumuseum.de/museum/mitarbeitende/kontakt-detailseite/dr-katrin-julia-westner) [](https://orcid.org/0000-0001-5529-1165) (Forschungsbereich Archäometallurgie, Leibniz-Forschungsmuseum für Georessourcen/Deutsches Bergbau-Museum Bochum, Bochum, Germany)
* [Yiu-Kang Hsu](https://www.bergbaumuseum.de/en/museum/mitarbeitende/kontakt-detailseite/yiu-kang-hsu) [](https://orcid.org/0000-0002-2439-4863) (Forschungsbereich Archäometallurgie, Leibniz-Forschungsmuseum für Georessourcen/Deutsches Bergbau-Museum Bochum, Bochum, Germany)
* [Annette Hornschuch](https://www.bergbaumuseum.de/museum/mitarbeitende/kontakt-detailseite/annette-hornschuch) (Forschungsbereich Montanarchäologie, Leibniz-Forschungsmuseum für Georessourcen/Deutsches Bergbau-Museum Bochum, Bochum, Germany)
## Regional editors
* China: [Siran Liu](https://enihmm.ustb.edu.cn/Staff/Academic_Senior_Research_Staff/bde24d0cde654407b9c56f78a81490a9.htm) [](https://orcid.org/0000-0001-9250-4561) (Institute for Cultural Heritage and History of Science & Technology, University of Science and Technology Beijing, China)
* Southeast Asia: [T. O. Pryce](https://iramat.cnrs.fr/user/oliver.pryce/) [](https://orcid.org/0000-0002-7290-141X) (Centre National de la Recherche Scientifique, UMR 7065 Institut de Recherche sur les ArchéoMATériaux, Université Paris-Saclay & CEA/CNRS UMR 3685 NIMBE, 91191 Gif-sur-Yvette, France)
* South Asia: [Thomas R. Fenn](https://www.ou.edu/cas/anthropology/faculty-staff/thomas-fenn) [](https://orcid.org/0000-0001-8560-6797) (Department of Anthropology, University of Oklahoma, Norman, OK, USA)
* India: [Meghna Desai](https://www.cyi.ac.cy/index.php/starc/about-the-center/starc-our-people/author/1059-meghna-desai.html) (Science and Technology in Archaeology and Culture Research Center (STARC), The Cyprus Institute, Nicosia, Cyprus)
* Iran: [Nima Nezafati](https://www.bergbaumuseum.de/en/museum/mitarbeitende/kontakt-detailseite/dr-nima-nezafati) [](https://orcid.org/0000-0002-5806-343X) (Forschungsbereich Archäometallurgie, Leibniz-Forschungsmuseum für Georessourcen/Deutsches Bergbau-Museum Bochum, Bochum, Germany)
* Iberian Peninsula: [Sonia García de Madinabeitia](https://www.ehu.eus/bilatu/buscar/seekuser.php?lang=es&u=bnBiZ2FtYXM=) [](https://orcid.org/0000-0002-3648-6490) (Departamento de Geología, Universidad del País Vasco (UPV/EHU), Bilbao, Spain)
* North Africa: [Thomas R. Fenn](https://www.ou.edu/cas/anthropology/faculty-staff/thomas-fenn) [](https://orcid.org/0000-0001-8560-6797) (Department of Anthropology, University of Oklahoma, Norman, OK, USA)
* South Africa: [Jay Stephens](https://archaeometry.missouri.edu/staff.html) [](https://orcid.org/0000-0003-1299-3946) (School of Anthropology, University of Arizona, Tucson, AZ, USA; Archaeometry Laboratory, Research Reactor Center, University of Missouri, Columbia, MO, USA)
* North America: [Virginie Renson](https://archaeometry.missouri.edu/profile(Virginie).html) [](https://orcid.org/0000-0002-5701-0985) (Archaeometry Laboratory, Research Reactor Center, University of Missouri, Columbia, MO, USA)
* South America: [María Florencia Becerra](https://www.conicet.gov.ar/new_scp/detalle.php?id=29835) [](https://orcid.org/0000-0001-6302-7452) (CONICET (Consejo Nacional de Investigaciones Científicas y Técnicas) - División Arqueología, Museo de La Plata, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, Argentina)
## Material editors
* Glass:
* [Laure Dussubieux](https://www.fieldmuseum.org/about/staff/profile/laure-dussubieux) [](https://orcid.org/0000-0002-9334-8131) (Field Museum, Chicago, IL, USA)
* [Alicia Van Ham-Meert](https://crea.phisoc.ulb.be/fr/corps-scientifique/van-ham-meert-alicia-1) [](https://orcid.org/0000-0001-6796-3141) (FNRS researcher CReA-patrimoine and 4MAT, Université Libre de Bruxelles, Belgium)
* [Thomas R. Fenn](https://www.ou.edu/cas/anthropology/faculty-staff/thomas-fenn) [](https://orcid.org/0000-0001-8560-6797) (Department of Anthropology, University of Oklahoma, Norman, OK, USA)
* Copper items:
* Frederik Rademakers [](https://orcid.org/0000-0002-6036-1612) (Department of Scientific Research, British Museum, London, United Kingdom)
* [T. O. Pryce](https://iramat.cnrs.fr/user/oliver.pryce/) [](https://orcid.org/0000-0002-7290-141X) (Centre National de la Recherche Scientifique, UMR 7065 Institut de Recherche sur les ArchéoMATériaux, Université Paris-Saclay & CEA/CNRS UMR 3685 NIMBE, 91191 Gif-sur-Yvette, France)
* Coins: [David Wigg-Wolf](https://www.dainst.org/wer-wir-sind/mitarbeitende/noslug/574) [](https://orcid.org/0000-0002-8604-544X) (Römisch-Germanische Kommission des Deutschen Archäologischen Instituts, Frankfurt, Germany)
* Lead items: [Maxime L'Héritier](https://arscan.parisnanterre.fr/membre/maxime-lheritier/) [](https://orcid.org/0000-0003-3428-2977) (University of Paris 8, Paris, France)
* Pigments: [Alexandra Rodler-Rørbo](https://www.oeaw.ac.at/en/oeai/institute/team/person/alexandra-rodler) [](https://orcid.org/0000-0002-4087-7160) (Austrian Archaeological Institute, Austrian Academy of Sciences, Vienna, Austria)
* Archaeological materials: [Grzegorz Żabiński](https://usosweb.ujd.edu.pl/kontroler.php?_action=katalog2/osoby/pokazOsobe&os_id=12306) [](https://orcid.org/0000-0003-3091-1035) (Institute of History, Jan Długosz University in Częstochowa, Częstochowa, Poland)
## Contributors (Data)
* Rebekka Elsasser (Forschungsbereich Archäometallurgie, Leibniz-Forschungsmuseum für Georessourcen/Deutsches Bergbau-Museum Bochum, Bochum, Germany)
* Sabine Fischer-Lechner (Forschungsbereich Archäometallurgie, Leibniz-Forschungsmuseum für Georessourcen/Deutsches Bergbau-Museum Bochum, Bochum, Germany)
# Funding
<table width="100%" cellspacing="0" cellpadding="0" border="0">
<tbody>
<tr>
<td><img src="www/dfg_logo.gif"></td>
<td halign="left">This work has received funding from the German Research Foundation (DFG) through the grants KL 1259/17-1 and WI 5923/2-1 (project number: 524790825).</td>
</tr>
</tbody>
</table>
# Acknowledgements
The initial GlobaLID database was compiled during years of own research and profited from the generous sharing of published lead isotope datasets by many colleagues. The creative and collective work of compiling the database and application was initiated when all members of the Core Team and E. Salzmann were members of the Archaeometallurgy group at the Deutsches Bergbau-Museum Bochum (DBM). H. Zietsch (DBM) compiled the initial literature references.
The Core Team feels deeply grateful for the support of the contributors. Without their efforts, GlobaLID would grow much slower and less accurate.
We are indebted to the R Core Team for providing and maintaining [R](https://cran.r-project.org/), the authors of the fantastic packages we use, and the R community on [stackoverflow](https://stackoverflow.com/) and many other webpages. The app uses the following packages:
* [bs4Dash](https://rinterface.github.io/bs4Dash/)
* [dplyr](https://dplyr.tidyverse.org/)
* [DT](https://rstudio.github.io/DT/)
* [ggplot2](https://ggplot2.tidyverse.org/)
* [kableExtra](https://haozhu233.github.io/kableExtra/)
* [knitr](https://yihui.org/knitr/)
* [ks](https://cran.r-project.org/web/packages/ks/)
* [leaflet](https://rstudio.github.io/leaflet/)
* [leaflet.providers](https://github.com/rstudio/leaflet.providers)
* [lemon](https://github.com/stefanedwards/lemon)
* [plotly](https://plotly-r.com/)
* [RColorBrewer](https://cran.r-project.org/web/packages/RColorBrewer/)
* [rmarkdown](https://rmarkdown.rstudio.com/)
* [rootSolve](https://cran.r-project.org/web/packages/rootSolve)
* [sendmailR](https://cran.r-project.org/web/packages/sendmailR/)
* [shiny](https://shiny.rstudio.com/)
* [shinyvalidate](https://rstudio.github.io/shinyvalidate/)
* [stringr](https://stringr.tidyverse.org/)
* [tidyr](https://tidyr.tidyverse.org/)
* [viridisLite](https://sjmgarnier.github.io/viridisLite/)
* [waiter](https://shiny.john-coene.com/waiter/)
* [zip](https://cran.r-project.org/web/packages/zip)
The implementation of the hCaptcha is a modified version of [shinyCAPTCHA](https://github.com/carlganz/shinyCAPTCHA).