From ca5557fa499213b90c72ed8887ac740936a1c380 Mon Sep 17 00:00:00 2001 From: Stefan Appelhoff Date: Mon, 24 Oct 2022 12:02:50 +0200 Subject: [PATCH 1/2] REL: v1.8.0 --- Release_Protocol.md | 2 +- mkdocs.yml | 2 +- src/CHANGES.md | 22 +++++++++++----------- src/appendices/contributors.md | 19 +++++++++++++++++-- src/schema/BIDS_VERSION | 2 +- 5 files changed, 31 insertions(+), 16 deletions(-) diff --git a/Release_Protocol.md b/Release_Protocol.md index 4a543b284f..cb1363f750 100644 --- a/Release_Protocol.md +++ b/Release_Protocol.md @@ -89,7 +89,7 @@ By pushing `rel/` branches to the main repository, the chances of continuous int discrepancies is reduced. ```Shell -git add src/CHANGES.md mkdocs.yml src/appendices/contributors.md +git add src/CHANGES.md mkdocs.yml src/appendices/contributors.md src/schema/BIDS_VERSION git commit -m 'REL: v1.2.0' git push -u upstream rel/1.2.0 ``` diff --git a/mkdocs.yml b/mkdocs.yml index 0bb0d57ede..1d37c69ba0 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -1,4 +1,4 @@ -site_name: Brain Imaging Data Structure v1.7.1-dev +site_name: Brain Imaging Data Structure v1.8.0 site_url: https://bids-specification.readthedocs.io/en/stable/ theme: name: material diff --git a/src/CHANGES.md b/src/CHANGES.md index 9215cec0d2..d995b69a68 100644 --- a/src/CHANGES.md +++ b/src/CHANGES.md @@ -1,6 +1,6 @@ # Changelog -## [Unreleased](https://github.com/bids-standard/bids-specification/tree/HEAD) +## [v1.8.0](https://bids-specification.readthedocs.io/en/v1.8.0) (2022-10-29) - \[FIX] Drop the functional and f for NIRS [#1325](https://github.com/bids-standard/bids-specification/pull/1325) ([rob-luke](https://github.com/rob-luke)) - \[FIX]\[SCHEMA] Add conditionals for PET ReconMethod\* and ReconFilter [#1299](https://github.com/bids-standard/bids-specification/pull/1299) ([bendhouseart](https://github.com/bendhouseart)) @@ -47,7 +47,7 @@ - \[ENH] BEP030: Functional Near-Infrared Spectroscopy [#802](https://github.com/bids-standard/bids-specification/pull/802) ([rob-luke](https://github.com/rob-luke)) - \[FIX] Clarify run entity to accommodate multiple imaging modalities [#760](https://github.com/bids-standard/bids-specification/pull/760) ([yarikoptic](https://github.com/yarikoptic)) -## [v1.7.0](https://github.com/bids-standard/bids-specification/tree/v1.7.0) (2022-02-15) +## [v1.7.0](https://bids-specification.readthedocs.io/en/v1.7.0) (2022-02-15) - \[FIX] Use wikipedia for TIFF URL, adobe's page is 404ing now [#1007](https://github.com/bids-standard/bids-specification/pull/1007) ([yarikoptic](https://github.com/yarikoptic)) - \[FIX] update highlighting of examples, JSON keys and values, and TSV headers or values in the schema [#998](https://github.com/bids-standard/bids-specification/pull/998) ([Remi-Gau](https://github.com/Remi-Gau)) @@ -139,7 +139,7 @@ - \[FIX] Correct iEEG example that contained double suffixes [#463](https://github.com/bids-standard/bids-specification/pull/463) ([yarikoptic](https://github.com/yarikoptic)) - \[ENH] introduce GeneratedBy to "core" BIDS [#440](https://github.com/bids-standard/bids-specification/pull/440) ([yarikoptic](https://github.com/yarikoptic)) -## [v1.6.0](https://github.com/bids-standard/bids-specification/tree/v1.6.0) (2021-04-22) +## [v1.6.0](https://bids-specification.readthedocs.io/en/v1.6.0) (2021-04-22) - \[FIX] Typos discovered by codespell [#784](https://github.com/bids-standard/bids-specification/pull/784) ([yarikoptic](https://github.com/yarikoptic)) - \[FIX] Rename "Unit" metadata to "Units" for consistency with existing fields [#773](https://github.com/bids-standard/bids-specification/pull/773) ([effigies](https://github.com/effigies)) @@ -158,7 +158,7 @@ - \[MISC] refactor stimuli mentioning sections in the events page [#697](https://github.com/bids-standard/bids-specification/pull/697) ([Remi-Gau](https://github.com/Remi-Gau)) - \[ENH] Bep 009: Positron Emission Tomography [#633](https://github.com/bids-standard/bids-specification/pull/633) ([melanieganz](https://github.com/melanieganz)) -## [v1.5.0](https://github.com/bids-standard/bids-specification/tree/v1.5.0) (2021-02-23) +## [v1.5.0](https://bids-specification.readthedocs.io/en/v1.5.0) (2021-02-23) - \[MISC] Updated TotalAcquiredVolumes into TotalAcquiredPairs [#742](https://github.com/bids-standard/bids-specification/pull/742) ([effigies](https://github.com/effigies)) - \[SCHEMA] Update qMRI fieldmap schema [#728](https://github.com/bids-standard/bids-specification/pull/728) ([effigies](https://github.com/effigies)) @@ -196,7 +196,7 @@ - \[SCHEMA] Render schema elements in text [#610](https://github.com/bids-standard/bids-specification/pull/610) ([tsalo](https://github.com/tsalo)) - \[ENH] Add part entity for complex-valued data [#424](https://github.com/bids-standard/bids-specification/pull/424) ([tsalo](https://github.com/tsalo)) -## [v1.4.1](https://github.com/bids-standard/bids-specification/tree/v1.4.1) (2020-10-13) +## [v1.4.1](https://bids-specification.readthedocs.io/en/v1.4.1) (2020-10-13) - \[INFRA] minor robustness enhancements to pdf build shell script [#642](https://github.com/bids-standard/bids-specification/pull/642) ([yarikoptic](https://github.com/yarikoptic)) - \[FIX] consistent CoordinateSystem fields for ephys [#641](https://github.com/bids-standard/bids-specification/pull/641) ([sappelhoff](https://github.com/sappelhoff)) @@ -255,7 +255,7 @@ - \[INFRA] Convert entity table to yaml [#475](https://github.com/bids-standard/bids-specification/pull/475) ([tsalo](https://github.com/tsalo)) - \[FIX] Recommend SI units formatting to adhere to CMIXF-12 [#411](https://github.com/bids-standard/bids-specification/pull/411) ([sappelhoff](https://github.com/sappelhoff)) -## [v1.4.0](https://github.com/bids-standard/bids-specification/tree/v1.4.0) (2020-06-11) +## [v1.4.0](https://bids-specification.readthedocs.io/en/v1.4.0) (2020-06-11) - \[FIX] Clarify language on unsetting a key/value pair [#495](https://github.com/bids-standard/bids-specification/pull/495) ([nicholst](https://github.com/nicholst)) - \[ENH] optionally allow LICENSE file [#483](https://github.com/bids-standard/bids-specification/pull/483) ([sappelhoff](https://github.com/sappelhoff)) @@ -275,7 +275,7 @@ - \[ENH] BEP 003: Common Derivatives [#265](https://github.com/bids-standard/bids-specification/pull/265) ([effigies](https://github.com/effigies)) - \[ENH] Add Glossary of terms/abbreviations used in the specification [#152](https://github.com/bids-standard/bids-specification/pull/152) ([yarikoptic](https://github.com/yarikoptic)) -## [v1.3.0](https://github.com/bids-standard/bids-specification/tree/v1.3.0) (2020-04-14) +## [v1.3.0](https://bids-specification.readthedocs.io/en/v1.3.0) (2020-04-14) - \[INFRA] add zenodo badge to README [#447](https://github.com/bids-standard/bids-specification/pull/447) ([sappelhoff](https://github.com/sappelhoff)) - \[MISC] Added contributors from VisLab [#444](https://github.com/bids-standard/bids-specification/pull/444) ([VisLab](https://github.com/VisLab)) @@ -294,7 +294,7 @@ - \[ENH] Add OPTIONAL EthicsApprovals field to dataset description [#412](https://github.com/bids-standard/bids-specification/pull/412) ([effigies](https://github.com/effigies)) - \[ENH] BEP 018 - Genetic Information [#395](https://github.com/bids-standard/bids-specification/pull/395) ([effigies](https://github.com/effigies)) -## [v1.2.2](https://github.com/bids-standard/bids-specification/tree/v1.2.2) (2020-02-12) +## [v1.2.2](https://bids-specification.readthedocs.io/en/v1.2.2) (2020-02-12) - \[FIX] improve wording on data dictionaries [#410](https://github.com/bids-standard/bids-specification/pull/410) ([sappelhoff](https://github.com/sappelhoff)) - \[MISC] update contributions by CPernet [#409](https://github.com/bids-standard/bids-specification/pull/409) ([CPernet](https://github.com/CPernet)) @@ -332,7 +332,7 @@ - \[ENH] Added discontinuous datatype for EEG and iEEG [#286](https://github.com/bids-standard/bids-specification/pull/286) ([wouterpotters](https://github.com/wouterpotters)) - \[FIX] Clarify paragraph about custom data types [#264](https://github.com/bids-standard/bids-specification/pull/264) ([effigies](https://github.com/effigies)) -## [v1.2.1](https://github.com/bids-standard/bids-specification/tree/v1.2.1) (2019-08-14) +## [v1.2.1](https://bids-specification.readthedocs.io/en/v1.2.1) (2019-08-14) - \[FIX] repair link in anatomical MRI table [#297](https://github.com/bids-standard/bids-specification/pull/297) ([sappelhoff](https://github.com/sappelhoff)) - \[ENH] Clarify requirements in Release Protocol [#294](https://github.com/bids-standard/bids-specification/pull/294) ([franklin-feingold](https://github.com/franklin-feingold)) @@ -386,7 +386,7 @@ - \[FIX] Specify marker filenames for KIT data (MEG) [#62](https://github.com/bids-standard/bids-specification/pull/62) ([monkeyman192](https://github.com/monkeyman192)) - \[FIX] Remove father-level for meg filetypes other than BTi/4D data [#19](https://github.com/bids-standard/bids-specification/pull/19) ([teonbrooks](https://github.com/teonbrooks)) -## [v1.2.0](https://github.com/bids-standard/bids-specification/tree/v1.2.0) (2019-03-04) +## [v1.2.0](https://bids-specification.readthedocs.io/en/v1.2.0) (2019-03-04) - \[MISC] Adding Dimitri Papadopoulos Orfanos to the list of contributors [#157](https://github.com/bids-standard/bids-specification/pull/157) ([DimitriPapadopoulos](https://github.com/DimitriPapadopoulos)) - \[FIX] use "specification" not "protocol" to refer to BIDS [#156](https://github.com/bids-standard/bids-specification/pull/156) ([yarikoptic](https://github.com/yarikoptic)) @@ -403,7 +403,7 @@ - \[MISC] Adding formal decision-making rules [#104](https://github.com/bids-standard/bids-specification/pull/104) ([chrisgorgo](https://github.com/chrisgorgo)) - \[FIX] number of small corrections to the specification [#98](https://github.com/bids-standard/bids-specification/pull/98) ([robertoostenveld](https://github.com/robertoostenveld)) -## [v1.1.2](https://github.com/bids-standard/bids-specification/tree/v1.1.2) (2019-01-10) +## [v1.1.2](https://bids-specification.readthedocs.io/en/v1.1.2) (2019-01-10) - \[ENH] Global fields in data dictionaries [#117](https://github.com/bids-standard/bids-specification/pull/117) ([chrisgorgo](https://github.com/chrisgorgo)) - \[MISC] Propose BEP026 MER [#116](https://github.com/bids-standard/bids-specification/pull/116) ([greydongilmore](https://github.com/greydongilmore)) diff --git a/src/appendices/contributors.md b/src/appendices/contributors.md index 6bae5c812b..df5b102ab9 100644 --- a/src/appendices/contributors.md +++ b/src/appendices/contributors.md @@ -48,10 +48,12 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add - Sylvain Baillet πŸ“–πŸ” - Shashank Bansal πŸ“– - Arshitha Basavaraj πŸ“–πŸš‡πŸ’» +- Ben Beasley πŸ’» - Leandro Beltrachini πŸ“– - Chris Benjamin πŸ“– - Timo Berg πŸ“– - Γ‰tienne Bergeron πŸ”£πŸ’» +- Giacomo Bertazzoli πŸ“– - Suyash Bhogawar πŸ“–πŸ’‘βš οΈπŸ”§πŸ’¬ - Stephan Bickel πŸ“– - Ulrike Bingel πŸ“– @@ -59,11 +61,13 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add - David Boas πŸ“– - Elizabeth Bock πŸ“–πŸ’‘ - Hugo Boniface πŸ“– +- Marta Bortoletto πŸ“– - Kristofer Bouchard πŸ“– - Mathieu Boudreau πŸ’¬πŸ€”πŸ“’ - Marie-HΓ©lΓ¨ne Bourget πŸ“–πŸ”£πŸ’»πŸ€” - Eric Bridgeford πŸ“–πŸ”§ - Teon L. Brooks πŸ“–πŸ’»βš οΈπŸ’¬πŸ‘€πŸ€”πŸ”§πŸ›πŸ“’ +- Martina Bulgari πŸ“– - Christian BΓΌchel πŸ“– - Vince D. Calhoun πŸ“– - Giulio Castegnaro πŸ“– @@ -94,6 +98,7 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add - Elizabeth DuPre πŸ“–πŸ’‘πŸ”πŸ€”πŸ’¬ - Joke Durnez πŸ“–πŸ”§πŸ’» - Eric Earl πŸ“–πŸ’¬πŸ›πŸš§πŸ”§πŸ€” +- Cyrus Eierud πŸ’» - Anders Eklund πŸ“–πŸ“’πŸ’» - Sara Elgayar πŸ“– - Oscar Esteban πŸ“–πŸ”§πŸ€”πŸ’¬πŸ’» @@ -117,6 +122,7 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add - Tristan Glatard πŸ“–πŸ’» - Mathias Goncalves πŸ’»πŸ”§πŸ“’ - Krzysztof J. Gorgolewski πŸ“–πŸ’»πŸ’¬πŸ€”πŸ”πŸ“’πŸ“πŸ’‘πŸ”Œ +- Rohan Goyal πŸ’» - Alexandre Gramfort πŸ“–πŸ’‘ - Klara Gregorova πŸ“– - Jeffrey S. Grethe πŸ’¬πŸ›βœ…πŸ“’ @@ -124,12 +130,14 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add - David Groppe πŸ“– - SΓΆren Grothkopp πŸ“– - Aysegul Gunduz πŸ“– +- Giacomo Guidali πŸ“– - Matthias GΓΌnther πŸ“– - Yaroslav O. Halchenko πŸ“–πŸ“’πŸ”§πŸ’¬πŸ› - Liberty Hamilton πŸ“– - Tom Hampshire πŸ“– - Daniel A. Handwerker πŸ“– - Michael Hanke πŸ“–πŸ€”πŸ”§πŸ›πŸ“’ +- Nell Hardcastle πŸ’» πŸ€” πŸš‡ πŸ’¬ πŸ‘€ - Michael P. Harms πŸ“–βš οΈπŸ”§ - Soichi Hayashi πŸ“–πŸ”§πŸ› - Richard N. Henson πŸ“– @@ -145,6 +153,7 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add - Andrew Hoopes πŸ“– - Christian Horea πŸ“– - Jean-Christophe Houde πŸ“– +- Vittorio Iacovella πŸ“– - Maria de la Iglesia πŸ“– - Ilkay Isik πŸ“– - Hamish Innes-Brown πŸ“– @@ -186,13 +195,16 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add - Robert Luke πŸ“– - Brian N. Lundstrom πŸ“– - Dan Lurie πŸ€”πŸ“–πŸ”§πŸ”ŒπŸ’»πŸ’¬ -- Camille Maumet πŸ“– +- Duncan Macleod πŸš‡ +- Eleonora Marcantoni πŸ“– - Christopher J. Markiewicz πŸ’¬πŸ›πŸ’»πŸ“–πŸŽ¨πŸ’‘πŸ€”πŸ”ŒπŸ‘€πŸ”§πŸ“’πŸ”£πŸ“‹πŸš§ +- Camille Maumet πŸ“– - Giacomo Mazzamuto πŸ“–πŸ”£ - David McAlpine πŸ“– - Manuel Mercier πŸ“–πŸ€” - Mark Mikkelsen πŸ“– - Kai J. Miller πŸ“– +- Carlo Miniussi πŸ“– - Markus Morawski πŸ“– - Clara Moreau πŸ“– - Jeremy Moreau πŸ“–πŸ’‘ @@ -211,6 +223,7 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add - Aki Nikolaidis πŸ“– - Gustav Nilsonne πŸ“– - Guiomar Niso πŸ€”πŸŽ¨πŸ”πŸ‘€πŸ“‹πŸ“πŸ”§πŸ›πŸ’»πŸ”£βœ…πŸ’¬πŸ“–πŸ’‘πŸ“’ +- Gregory Noack πŸ’» ⚠️ - Martin Noergaard πŸ“–πŸ”£πŸ’»πŸ€”πŸ“’ - Michael P. Notter πŸ’¬πŸ“βœ…πŸ“’πŸ“– - Jeffrey G. Ojemann πŸ“– @@ -225,6 +238,7 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add - Maurice Pasternak πŸ““ - ChloΓ© Pasturel πŸ“– - Dianne Patterson πŸ“– +- Mateusz Pawlik πŸ€” πŸ“– 🚧 πŸ‘€ πŸ› - John Pellman πŸ“– - Cyril Pernet πŸ’¬πŸ“πŸ“–πŸŽ¨πŸ’‘πŸ“‹πŸ€”πŸ“’ - Franco Pestilli πŸ“–πŸ’»πŸŽ¨πŸ’‘πŸ€”πŸ‘€πŸ”§πŸ“‹πŸ”πŸš‡ @@ -260,6 +274,7 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add - Maureen J Shader πŸ“– - Robert E. Smith πŸ’»πŸ“– - Vanessa Sochat πŸ“– +- Anibal SΓ³lon πŸ› - Tamas Spisak πŸ“– - Julia Sprenger πŸ“– - Isla Staden πŸ“– @@ -278,7 +293,7 @@ If you contributed to the BIDS ecosystem and your name is not listed, please add - William Triplett πŸ“– - Jessica A. Turner πŸ“– - Pieter Vandemaele πŸ“–πŸ’» -- Max A. van den Boom πŸ’»πŸ‘€πŸ“– +- Max A. van den Boom πŸ’»πŸ‘€πŸ“–πŸ› - Wietske van der Zwaag πŸ”£πŸ’¬ - Matthias Van Osch πŸ“– - GaΓ«l Varoquaux πŸ“– diff --git a/src/schema/BIDS_VERSION b/src/schema/BIDS_VERSION index 896d75a903..27f9cd322b 100644 --- a/src/schema/BIDS_VERSION +++ b/src/schema/BIDS_VERSION @@ -1 +1 @@ -1.7.1-dev +1.8.0 From 399f8f43bf23e5a27afe05da2eaef2aaffca8331 Mon Sep 17 00:00:00 2001 From: Stefan Appelhoff Date: Mon, 24 Oct 2022 15:11:24 +0200 Subject: [PATCH 2/2] bump schema version --- src/schema/SCHEMA_VERSION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/schema/SCHEMA_VERSION b/src/schema/SCHEMA_VERSION index fb0b754233..a918a2aa18 100644 --- a/src/schema/SCHEMA_VERSION +++ b/src/schema/SCHEMA_VERSION @@ -1 +1 @@ -0.6.0-dev +0.6.0