From 87a5a2bb515cbcbba6ad5e2bf309601edb698769 Mon Sep 17 00:00:00 2001 From: Michael L Heuer Date: Thu, 14 Dec 2023 10:40:33 -0600 Subject: [PATCH] Update samtools container image to 1.19--h50ea8bc_0. --- .../main/scala/org/bdgenomics/cannoli/SamtoolsMpileup.scala | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/core/src/main/scala/org/bdgenomics/cannoli/SamtoolsMpileup.scala b/core/src/main/scala/org/bdgenomics/cannoli/SamtoolsMpileup.scala index b9ce1a3..93a5f30 100644 --- a/core/src/main/scala/org/bdgenomics/cannoli/SamtoolsMpileup.scala +++ b/core/src/main/scala/org/bdgenomics/cannoli/SamtoolsMpileup.scala @@ -36,8 +36,8 @@ class SamtoolsMpileupArgs extends Args4jBase { @Args4jOption(required = false, name = "-executable", usage = "Path to the samtools executable. Defaults to samtools.") var executable: String = "samtools" - @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/samtools:1.16.1--h6899075_1.") - var image: String = "quay.io/biocontainers/samtools:1.16.1--h6899075_1" + @Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/samtools:1.19--h50ea8bc_0.") + var image: String = "quay.io/biocontainers/samtools:1.19--h50ea8bc_0" @Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.") var sudo: Boolean = false