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Copy pathGIAB_CDS_GIABhiconf_nodownsample.metrics
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GIAB_CDS_GIABhiconf_nodownsample.metrics
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SAMPLE BAIT_SET BAIT_TERRITORY BAIT_DESIGN_EFFICIENCY ON_BAIT_BASES NEAR_BAIT_BASES OFF_BAIT_BASES PCT_SELECTED_BASES PCT_OFF_BAIT ON_BAIT_VS_SELECTED MEAN_BAIT_COVERAGE PCT_USABLE_BASES_ON_BAIT PCT_USABLE_BASES_ON_TARGET FOLD_ENRICHMENT HS_LIBRARY_SIZE HS_PENALTY_10X HS_PENALTY_20X HS_PENALTY_30X HS_PENALTY_40X HS_PENALTY_50X HS_PENALTY_100X TARGET_TERRITORY GENOME_SIZE TOTAL_READS PF_READS PF_BASES PF_UNIQUE_READS PF_UQ_READS_ALIGNED PF_BASES_ALIGNED PF_UQ_BASES_ALIGNED ON_TARGET_BASES PCT_PF_READS PCT_PF_UQ_READS PCT_PF_UQ_READS_ALIGNED MEAN_TARGET_COVERAGE MEDIAN_TARGET_COVERAGE MAX_TARGET_COVERAGE MIN_TARGET_COVERAGE ZERO_CVG_TARGETS_PCT PCT_EXC_DUPE PCT_EXC_ADAPTER PCT_EXC_MAPQ PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_OFF_TARGET FOLD_80_BASE_PENALTY PCT_TARGET_BASES_1X PCT_TARGET_BASES_2X PCT_TARGET_BASES_10X PCT_TARGET_BASES_20X PCT_TARGET_BASES_30X PCT_TARGET_BASES_40X PCT_TARGET_BASES_50X PCT_TARGET_BASES_100X AT_DROPOUT GC_DROPOUT HET_SNP_SENSITIVITY HET_SNP_Q SAMPLE LIBRARY READ_GROUP
HG001_EXOME_BWA GRCh37_CDS_GIABhiconf 32233855 1 20046356790 17903249542 10209802897 0.788 0.212 0.528236 621.903796 0.40482 0.200754 41.772854 147955321 7.096746 7.244105 7.403745 7.575664 7.759863 8.879793 32233855 3234834689 330127542 330127542 49519131300 223470105 222182399 48159409229 32490544732 9941139309 1 0.676921 0.994238 308.406776 200 2925 0 0.043906 0.325354 0.00005 0.052709 0.010352 0.114566 0.290556 2.126943 0.956266 0.954052 0.948618 0.945428 0.942289 0.938467 0.933487 0.87988 0 0 0.954096 13
HG001_GENOME_BWA GRCh37_CDS_GIABhiconf 32233855 1 716223588 2508390380 71251796582 0.043297 0.956703 0.222111 22.219607 0.009409 0.008815 0.965094 5010128704 142.916943 142.916943 142.916943 143.139674 143.273312 143.629681 32233855 3234834689 514355450 514355450 76124606600 507980762 504045935 74476410550 73627803859 671009406 1 0.987606 0.992254 20.816915 21 121 0 0.039735 0.011394 0.000001 0.071223 0.02728 0.010768 0.87033 1.301057 0.959524 0.958591 0.945061 0.595431 0.103987 0.004388 0.000056 0.000001 0 0 0.957064 14
HG002_EXOME_BWA GRCh37_CDS_GIABhiconf 32233855 1 7782188022 5847054347 5062363302 0.729164 0.270836 0.570992 241.42902 0.410697 0.273316 41.782551 538416753 7.416404 7.458908 7.515581 7.558085 7.606257 7.878286 32233855 3234834689 150386776 150386776 18948733776 143247236 142794909 18691605671 17801772772 5178991800 1 0.952525 0.996842 160.669327 148 1759 0 0.044925 0.047606 0.000004 0.060904 0.021137 0.213454 0.379834 2.142258 0.955577 0.953272 0.946981 0.939189 0.926635 0.908092 0.883607 0.699897 0 0 0.952887 13
HG002_GENOME_BWA GRCh37_CDS_GIABhiconf 32233855 1 746463264 2619986281 74477585003 0.043246 0.956754 0.221736 23.157741 0.009375 0.008746 0.962328 1044323019 148.834403 149.299046 149.686249 150.460653 150.925296 153.527297 32233855 3234834689 537993296 537993296 79623007808 527789000 524448850 77844034548 76460727434 696356243 1 0.981033 0.993671 21.603257 22 157 0 0.039709 0.01777 0 0.071731 0.029477 0.009316 0.862765 1.350204 0.959568 0.958603 0.939817 0.63401 0.144594 0.009511 0.000202 0.000002 0 0 0.956549 14
HG003_EXOME_BWA GRCh37_CDS_GIABhiconf 32233855 1 6574029122 5020798802 4373803859 0.7261 0.2739 0.566979 203.947965 0.405687 0.273383 41.31462 534509369 7.469807 7.5182 7.570626 7.627084 7.670638 7.94164 32233855 3234834689 128608638 128608638 16204688388 123322667 122925495 15968631783 15310488377 4430089764 1 0.958899 0.996779 137.435928 126 1495 0 0.045499 0.041215 0.000007 0.060284 0.02127 0.211941 0.387872 2.147436 0.955174 0.952618 0.945654 0.935129 0.918057 0.892908 0.859562 0.626879 0 0 0.952288 13
HG003_GENOME_BWA GRCh37_CDS_GIABhiconf 32233855 1 747965576 2630689952 75300235249 0.042942 0.957058 0.22138 23.204348 0.009263 0.008605 0.954033 924425652 150.022089 150.724006 151.425923 151.893867 152.54899 155.731013 32233855 3234834689 545603878 545603878 80749373944 534334102 529074458 78678890777 77135671771 694877907 1 0.979344 0.990157 21.557394 22 108 0 0.040095 0.019614 0 0.072402 0.03341 0.006892 0.858855 1.347337 0.95922 0.958267 0.936889 0.618159 0.154921 0.012901 0.000324 0.000001 0 0 0.956105 14
HG004_EXOME_BWA GRCh37_CDS_GIABhiconf 32233855 1 7363793373 5525301979 5236681047 0.711092 0.288908 0.57132 228.449044 0.399882 0.2643 40.770386 499581610 7.479323 7.534293 7.584682 7.644233 7.690957 7.998789 32233855 3234834689 146149978 146149978 18414897228 139114658 138609199 18125776399 17250542107 4867062621 1 0.951862 0.996367 150.99226 140 1615 0 0.044494 0.048287 0.000008 0.064858 0.021222 0.21512 0.382003 2.097115 0.955897 0.953578 0.947247 0.939275 0.926509 0.90694 0.880111 0.680625 0 0 0.953182 13
HG004_GENOME_BWA GRCh37_CDS_GIABhiconf 32233855 1 735483708 2573421156 72545225424 0.043622 0.956378 0.222274 22.817119 0.0095 0.008895 0.973047 1021346363 145.277945 145.731435 146.109343 146.865159 147.318648 149.85819 32233855 3234834689 523087644 523087644 77416971312 514108659 510597941 75854130288 74632132260 688633543 1 0.982835 0.993171 21.363673 22 185 0 0.039283 0.01611 0.000001 0.069254 0.026525 0.007176 0.871862 1.33523 0.959973 0.958985 0.947229 0.627667 0.122881 0.006065 0.000118 0.000002 0 0 0.957553 14
HG005_EXOME_BWA GRCh37_CDS_GIABhiconf 32233855 1 6301091518 4798630781 4065678478 0.731911 0.268089 0.56768 195.480544 0.409896 0.270529 41.696705 374525580 7.473842 7.554315 7.623291 7.692268 7.779638 8.202693 32233855 3234834689 122003250 122003250 15372409500 115245212 114919098 15165400777 14323328990 4158690157 1 0.944608 0.99717 129.016221 118 1349 0 0.045737 0.055526 0.000008 0.060224 0.024939 0.207292 0.377801 2.15027 0.954886 0.952346 0.944986 0.933028 0.912988 0.883593 0.845518 0.594686 0 0 0.951947 13
HG005_GENOME_BWA GRCh37_CDS_GIABhiconf 32233855 1 1201849853 4719924053 117710866878 0.047898 0.952102 0.202954 37.285328 0.009374 0.007994 0.975567 203894783 155.924793 157.776273 159.751184 161.849528 163.849126 175.994834 32233855 3234834689 516524845 516524845 128204326330 496946808 493703662 123632640784 119068196645 1024813793 1 0.962097 0.993474 31.793088 32 169 0 0.039156 0.036919 0.000007 0.061738 0.050493 0.044446 0.798125 1.324712 0.960156 0.959411 0.954824 0.900256 0.609395 0.235865 0.043955 0.000007 0 0 0.959138 14