diff --git a/scripts/variantstore/wdl/GvsExtractCallset.wdl b/scripts/variantstore/wdl/GvsExtractCallset.wdl index a62bccb4cd5..97d0033f9be 100644 --- a/scripts/variantstore/wdl/GvsExtractCallset.wdl +++ b/scripts/variantstore/wdl/GvsExtractCallset.wdl @@ -573,7 +573,7 @@ task CreateManifestAndOptionallyCopyOutputs { if [ -n "$OUTPUT_GCS_DIR" ]; then # Copy VCFs, indexes and the manifest to the output directory. echo manifest.txt >> vcf_manifest.txt - cat vcf_manifest.txt | gcloud storage cp -I ${OUTPUT_GCS_DIR} + cat vcf_manifest.txt | xargs -IFILE gsutil cp FILE ${OUTPUT_GCS_DIR} fi >>> output {