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Provide CellProfiler pipeline files for the datasets #15

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shntnu opened this issue Aug 31, 2023 · 1 comment
Open

Provide CellProfiler pipeline files for the datasets #15

shntnu opened this issue Aug 31, 2023 · 1 comment

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@shntnu
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shntnu commented Aug 31, 2023

YJ asked:

could kindly share the CellProfiler pipeline with me if you have the CellProfiler pipeline of the LUAD dataset which can get the CellProfiler morphological profile data?
@shntnu
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shntnu commented Aug 31, 2023

Pipelines are at https://github.com/broadinstitute/imaging-platform-pipelines/tree/455d8ffa2a0a6cb7341868139f3f1719b9d5ea2c/

Dataset Cell line Pipeline set
CDRP-BBBC047-Bray U2OS cellpainting_u2os_20x_imagexpress_cdrp
CDRPBIO-BBBC036-Bray U2OS cellpainting_u2os_20x_imagexpress_cdrp
LUAD-BBBC041-Caicedo A549 cellpainting_a549_20x_imagexpress
TA-ORF-BBBC037-Rohban U2OS cellpainting_u2os_20x_imagexpress_cdrp
LINCS-Pilot1 A549 cellpainting_a549_20x_phenix_bin1

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