From b1b45210cea09c7bc428981dafe59e24fcfb4ae0 Mon Sep 17 00:00:00 2001
From: csoneson <csoneson@users.noreply.github.com>
Date: Tue, 7 Jan 2025 01:31:59 +0000
Subject: [PATCH] [actions] update 21 packages

---
 renv/profiles/lesson-requirements/renv.lock | 73 ++++++++++-----------
 1 file changed, 36 insertions(+), 37 deletions(-)

diff --git a/renv/profiles/lesson-requirements/renv.lock b/renv/profiles/lesson-requirements/renv.lock
index 82e54334..7fb57588 100644
--- a/renv/profiles/lesson-requirements/renv.lock
+++ b/renv/profiles/lesson-requirements/renv.lock
@@ -62,10 +62,10 @@
     },
     "BH": {
       "Package": "BH",
-      "Version": "1.84.0-0",
+      "Version": "1.87.0-1",
       "Source": "Repository",
       "Repository": "CRAN",
-      "Hash": "a8235afbcd6316e6e91433ea47661013"
+      "Hash": "468d9a03ba57f22ebde50060fd13ba9f"
     },
     "Biobase": {
       "Package": "Biobase",
@@ -438,18 +438,18 @@
     },
     "KernSmooth": {
       "Package": "KernSmooth",
-      "Version": "2.23-24",
+      "Version": "2.23-26",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "stats"
       ],
-      "Hash": "9f33a1ee37bbe8919eb2ec4b9f2473a5"
+      "Hash": "2fb39782c07b5ad422b0448ae83f64c4"
     },
     "MASS": {
       "Package": "MASS",
-      "Version": "7.3-61",
+      "Version": "7.3-64",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -460,7 +460,7 @@
         "stats",
         "utils"
       ],
-      "Hash": "0cafd6f0500e5deba33be22c46bf6055"
+      "Hash": "49d2d8090b74c1179df1aff16201caf8"
     },
     "Matrix": {
       "Package": "Matrix",
@@ -551,7 +551,7 @@
     },
     "RSQLite": {
       "Package": "RSQLite",
-      "Version": "2.3.8",
+      "Version": "2.3.9",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -566,7 +566,7 @@
         "plogr",
         "rlang"
       ],
-      "Hash": "7ab2505b85e2ed1b07873b56e8beddd1"
+      "Hash": "52294139fc7a21bca806b49ae2f315ca"
     },
     "Rcpp": {
       "Package": "Rcpp",
@@ -581,7 +581,7 @@
     },
     "RcppArmadillo": {
       "Package": "RcppArmadillo",
-      "Version": "14.2.0-1",
+      "Version": "14.2.2-1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -591,7 +591,7 @@
         "stats",
         "utils"
       ],
-      "Hash": "ce9c35ab9ea9c6ef4e27a08868cdb32b"
+      "Hash": "9da7c242d94a8419d045f6b3a64b9765"
     },
     "RcppEigen": {
       "Package": "RcppEigen",
@@ -790,7 +790,7 @@
     },
     "ape": {
       "Package": "ape",
-      "Version": "5.8",
+      "Version": "5.8-1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -805,7 +805,7 @@
         "stats",
         "utils"
       ],
-      "Hash": "16b5ff4dff0ead9ea955f62f794b1535"
+      "Hash": "54e5b03e928da23e75dc5bb633648d27"
     },
     "apeglm": {
       "Package": "apeglm",
@@ -827,7 +827,7 @@
     },
     "aplot": {
       "Package": "aplot",
-      "Version": "0.2.3",
+      "Version": "0.2.4",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -840,7 +840,7 @@
         "patchwork",
         "utils"
       ],
-      "Hash": "d2dcbd0459b23b43cc078e2676bd7b84"
+      "Hash": "b557089cc1405f6b375cdb3ebf43cc02"
     },
     "askpass": {
       "Package": "askpass",
@@ -907,13 +907,13 @@
     },
     "bit": {
       "Package": "bit",
-      "Version": "4.5.0",
+      "Version": "4.5.0.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
-      "Hash": "5dc7b2677d65d0e874fc4aaf0e879987"
+      "Hash": "f89f074e0e49bf1dbe3eba0a15a91476"
     },
     "bit64": {
       "Package": "bit64",
@@ -1038,7 +1038,7 @@
     },
     "cluster": {
       "Package": "cluster",
-      "Version": "2.1.6",
+      "Version": "2.1.8",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1048,7 +1048,7 @@
         "stats",
         "utils"
       ],
-      "Hash": "0aaa05204035dc43ea0004b9c76611dd"
+      "Hash": "b361779da7f8b129a1859b6cf243ba58"
     },
     "clusterProfiler": {
       "Package": "clusterProfiler",
@@ -1158,13 +1158,13 @@
     },
     "cpp11": {
       "Package": "cpp11",
-      "Version": "0.5.0",
+      "Version": "0.5.1",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
-      "Hash": "91570bba75d0c9d3f1040c835cee8fba"
+      "Hash": "9df43854f1c84685d095ed6270b52387"
     },
     "crayon": {
       "Package": "crayon",
@@ -1193,24 +1193,24 @@
     },
     "curl": {
       "Package": "curl",
-      "Version": "6.0.1",
+      "Version": "6.1.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
-      "Hash": "e8ba62486230951fcd2b881c5be23f96"
+      "Hash": "8dd23d308c751efdf675124aad4bf5d7"
     },
     "data.table": {
       "Package": "data.table",
-      "Version": "1.16.2",
+      "Version": "1.16.4",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R",
         "methods"
       ],
-      "Hash": "2e00b378fc3be69c865120d9f313039a"
+      "Hash": "38bbf05fc2503143db4c734a7e5cab66"
     },
     "digest": {
       "Package": "digest",
@@ -1356,13 +1356,13 @@
     },
     "fastmatch": {
       "Package": "fastmatch",
-      "Version": "1.1-4",
+      "Version": "1.1-6",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "R"
       ],
-      "Hash": "8c406b7284bbaef08e01c6687367f195"
+      "Hash": "7820eab9df275bcc3cb52d827993942d"
     },
     "fgsea": {
       "Package": "fgsea",
@@ -1497,7 +1497,7 @@
     },
     "ggfun": {
       "Package": "ggfun",
-      "Version": "0.1.7",
+      "Version": "0.1.8",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1510,7 +1510,7 @@
         "utils",
         "yulab.utils"
       ],
-      "Hash": "e20ff08a801abd734bf95801ef02adba"
+      "Hash": "ec2db46b707458520f6cd821cb313732"
     },
     "ggnewscale": {
       "Package": "ggnewscale",
@@ -1909,7 +1909,7 @@
     },
     "igraph": {
       "Package": "igraph",
-      "Version": "2.1.1",
+      "Version": "2.1.2",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -1928,7 +1928,7 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "c03878b48737a0e2da3b772d7b2e22da"
+      "Hash": "9a93b743b2461ba06ba3b5df12011145"
     },
     "isoband": {
       "Package": "isoband",
@@ -2244,13 +2244,13 @@
     },
     "openssl": {
       "Package": "openssl",
-      "Version": "2.2.2",
+      "Version": "2.3.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "askpass"
       ],
-      "Hash": "d413e0fef796c9401a4419485f709ca1"
+      "Hash": "5bfe2927efa9f87766ca9605301ea48f"
     },
     "org.Hs.eg.db": {
       "Package": "org.Hs.eg.db",
@@ -2295,12 +2295,11 @@
     },
     "pillar": {
       "Package": "pillar",
-      "Version": "1.9.0",
+      "Version": "1.10.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
         "cli",
-        "fansi",
         "glue",
         "lifecycle",
         "rlang",
@@ -2308,7 +2307,7 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "15da5a8412f317beeee6175fbc76f4bb"
+      "Hash": "101ca350beea21261a15ba169d7a8513"
     },
     "pkgconfig": {
       "Package": "pkgconfig",
@@ -2583,7 +2582,7 @@
     },
     "shiny": {
       "Package": "shiny",
-      "Version": "1.9.1",
+      "Version": "1.10.0",
       "Source": "Repository",
       "Repository": "CRAN",
       "Requirements": [
@@ -2612,7 +2611,7 @@
         "withr",
         "xtable"
       ],
-      "Hash": "6a293995a66e12c48d13aa1f957d09c7"
+      "Hash": "4b4477baa9a939c5577e5ddb4bf01f28"
     },
     "shinyAce": {
       "Package": "shinyAce",