diff --git a/package-lock.json b/package-lock.json index 103347751..9a92de04d 100644 --- a/package-lock.json +++ b/package-lock.json @@ -9,7 +9,8 @@ "version": "0.45.0", "license": "MIT", "dependencies": { - "@blueprintjs/core": "^5.6.0", + "@blueprintjs/core": "^5.7.1", + "@blueprintjs/icons": "^5.4.1", "@emotion/react": "^11.11.1", "@emotion/styled": "^11.11.0", "@lukeed/uuid": "^2.0.1", @@ -33,72 +34,72 @@ "ml-baseline-correction-regression": "^1.0.2", "ml-conrec": "^5.0.2", "ml-gsd": "^12.1.3", - "ml-matrix": "^6.10.8", + "ml-matrix": "^6.11.0", "ml-spectra-processing": "^12.8.0", "ml-stat": "^1.3.3", "multiplet-analysis": "^2.1.2", "nmr-correlation": "^2.3.3", "nmr-load-save": "^0.23.9", "nmr-processing": "^11.6.1", - "nmredata": "^0.9.7", + "nmredata": "^0.9.9", "numeral": "^2.0.6", - "openchemlib": "^8.7.1", - "openchemlib-utils": "^5.6.1", + "openchemlib": "^8.7.2", + "openchemlib-utils": "^5.6.0", "papaparse": "^5.4.1", "re-resizable": "6.9.11", "react-d3-utils": "^1.0.0", 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"version": "3.0.0", + "resolved": "https://registry.npmjs.org/strip-final-newline/-/strip-final-newline-3.0.0.tgz", + "integrity": "sha512-dOESqjYr96iWYylGObzd39EuNTa5VJxyvVAEm5Jnh7KGo75V43Hk1odPQkNDyXNmUR6k+gEiDVXnjB8HJ3crXw==", + "dev": true, + "engines": { + "node": ">=12" + }, + "funding": { + "url": "https://github.com/sponsors/sindresorhus" + } + }, "node_modules/vscode-languageserver-textdocument": { "version": "1.0.11", "resolved": "https://registry.npmjs.org/vscode-languageserver-textdocument/-/vscode-languageserver-textdocument-1.0.11.tgz", @@ -13721,7 +14049,6 @@ "version": "2.0.2", "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz", "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==", - "dev": true, "dependencies": { "isexe": "^2.0.0" }, @@ -13974,8 +14301,7 @@ "node_modules/wrappy": { "version": "1.0.2", "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz", - "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==", - "dev": true + "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==" }, "node_modules/write-file-atomic": { "version": "3.0.3", @@ -14045,7 +14371,6 @@ "version": "0.1.0", "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz", "integrity": "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==", - "dev": true, "engines": { "node": ">=10" }, diff --git a/package.json b/package.json index ff670f031..ec3d5b32f 100644 --- a/package.json +++ b/package.json @@ -56,7 +56,8 @@ "react-dom": ">=18.0.0" }, "dependencies": { - "@blueprintjs/core": "^5.6.0", + "@blueprintjs/core": "^5.7.1", + "@blueprintjs/icons": "^5.4.1", "@emotion/react": "^11.11.1", "@emotion/styled": "^11.11.0", "@lukeed/uuid": "^2.0.1", @@ -80,71 +81,71 @@ "ml-baseline-correction-regression": "^1.0.2", "ml-conrec": "^5.0.2", "ml-gsd": "^12.1.3", - "ml-matrix": "^6.10.8", + "ml-matrix": "^6.11.0", "ml-spectra-processing": "^12.8.0", "ml-stat": "^1.3.3", "multiplet-analysis": "^2.1.2", "nmr-correlation": "^2.3.3", "nmr-load-save": "^0.23.9", "nmr-processing": "^11.6.1", - "nmredata": "^0.9.7", + "nmredata": "^0.9.9", "numeral": "^2.0.6", - "openchemlib": "^8.7.1", - "openchemlib-utils": "^5.6.1", + "openchemlib": "^8.7.2", + "openchemlib-utils": "^5.6.0", "papaparse": "^5.4.1", "re-resizable": "6.9.11", "react-d3-utils": "^1.0.0", "react-dropzone": "^14.2.3", "react-error-boundary": "^4.0.11", - "react-icons": "^4.11.0", + "react-icons": "^4.12.0", "react-inspector": "^6.0.2", "react-mf": "^2.0.2", "react-ocl": "^6.1.0", "react-ocl-nmr": "^3.0.1", "react-plot": "^1.4.2", "react-rnd": "^10.4.1", - "react-science": "^0.27.0", + "react-science": "0.30.2-pre.1702391005", "react-slider": "^2.0.6", "react-table": "^7.8.0", "react-transition-group": "^4.4.5", - "react-use": "^17.4.0", + "react-use": "^17.4.2", "smart-array-filter": "^4.0.2", "yup": "^1.3.2" }, "devDependencies": { - "@babel/plugin-transform-modules-commonjs": "^7.23.0", - "@babel/preset-react": "^7.22.15", - "@babel/preset-typescript": "^7.23.2", - "@playwright/test": "^1.39.0", + "@babel/plugin-transform-modules-commonjs": "^7.23.3", + "@babel/preset-react": "^7.23.3", + "@babel/preset-typescript": "^7.23.3", + "@playwright/test": "^1.40.1", "@simbathesailor/use-what-changed": "^2.0.0", - "@types/d3": "^7.4.2", - "@types/lodash": "^4.14.200", - "@types/node": "^20.8.10", - "@types/papaparse": "^5.3.10", - "@types/react": "^18.2.36", - "@types/react-dom": "^18.2.14", - "@types/react-table": "^7.7.17", - "@vitejs/plugin-react-swc": "^3.4.1", - "@vitest/coverage-v8": "^0.34.6", + "@types/d3": "^7.4.3", + "@types/lodash": "^4.14.202", + "@types/node": "^20.10.4", + "@types/papaparse": "^5.3.14", + "@types/react": "^18.2.42", + "@types/react-dom": "^18.2.17", + "@types/react-table": "^7.7.18", + "@vitejs/plugin-react-swc": "^3.5.0", + "@vitest/coverage-v8": "^1.0.1", "cross-env": "^7.0.3", - "cspell": "^7.3.8", - "eslint": "^8.53.0", - "eslint-config-cheminfo-react": "^10.0.0", - "eslint-config-cheminfo-typescript": "^12.0.4", + "cspell": "^8.1.3", + "eslint": "^8.55.0", + "eslint-config-cheminfo-react": "^10.1.0", + "eslint-config-cheminfo-typescript": "^12.1.0", "modern-normalize": "^2.0.0", "postcss-styled-syntax": "^0.5.0", - "prettier": "^3.0.3", - "rc-menu": "^9.12.2", + "prettier": "^3.1.0", + "rc-menu": "^9.12.4", "react": "^18.2.0", "react-dom": "^18.2.0", - "react-router-dom": "^6.18.0", + "react-router-dom": "^6.20.1", "rimraf": "^5.0.5", "rollup-plugin-analyzer": "^4.0.0", "serve": "^14.2.1", "stylelint": "^15.11.0", "stylelint-config-standard": "^34.0.0", - "typescript": "^5.2.2", - "vite": "^4.5.0", - "vitest": "^0.34.6" + "typescript": "^5.3.3", + "vite": "^5.0.6", + "vitest": "^1.0.1" } } diff --git a/src/component/1d-2d/tools/BrushXY.tsx b/src/component/1d-2d/tools/BrushXY.tsx index a58d144f5..c78559223 100644 --- a/src/component/1d-2d/tools/BrushXY.tsx +++ b/src/component/1d-2d/tools/BrushXY.tsx @@ -102,14 +102,14 @@ export default function BrushXY({ dimensionBorder.endX && endX > dimensionBorder.endX ? dimensionBorder.endX : dimensionBorder.startX && endX < dimensionBorder.startX - ? dimensionBorder.startX - : endX; + ? dimensionBorder.startX + : endX; endY = dimensionBorder.endY && endY > dimensionBorder.endY ? dimensionBorder.endY : dimensionBorder.startY && endY < dimensionBorder.startY - ? dimensionBorder.startY - : endY; + ? dimensionBorder.startY + : endY; const scaleX = brushType === BRUSH_TYPE.X || brushType === BRUSH_TYPE.XY diff --git a/src/component/elements/ContextMenuBluePrint.tsx b/src/component/elements/ContextMenuBluePrint.tsx new file mode 100644 index 000000000..a36d05139 --- /dev/null +++ b/src/component/elements/ContextMenuBluePrint.tsx @@ -0,0 +1,67 @@ +import { + ContextMenuProps as BluePrintContextMenuProps, + Menu, + MenuItem, + MenuItemProps, + showContextMenu, +} from '@blueprintjs/core'; +import React, { ComponentProps, ElementType, ReactNode } from 'react'; + +export interface ContextMenuItem extends MenuItemProps { + data?: object; +} + +type ElementProps = E extends ElementType + ? ComponentProps + : never; + +export interface BaseContextMenuProps { + options: ContextMenuItem[]; + onSelect: (data?: object) => void; +} + +export interface ContextMenuProps + extends BaseContextMenuProps, + Omit { + as?: E; + children: ReactNode; +} + +export function ContextMenu( + props: ContextMenuProps & ElementProps, +) { + const { options, onSelect, children, as: Wrapper = 'div', ...other } = props; + + function handleContextMenu(event: React.MouseEvent) { + if (!Array.isArray(options) || options.length === 0) { + return; + } + + const content = ( + + {options.map((option) => ( + onSelect(option?.data)} + /> + ))} + + ); + + event.preventDefault(); + showContextMenu({ + content, + targetOffset: { + left: event.clientX, + top: event.clientY, + }, + }); + } + + return ( + + {children} + + ); +} diff --git a/src/component/elements/DropdownMenu.tsx b/src/component/elements/DropdownMenu.tsx new file mode 100644 index 000000000..288156ed1 --- /dev/null +++ b/src/component/elements/DropdownMenu.tsx @@ -0,0 +1,39 @@ +import { + Menu, + MenuItem, + MenuItemProps, + Popover, + PopoverProps, +} from '@blueprintjs/core'; + +export interface DropdownMenuItem extends MenuItemProps { + data?: object; +} + +export interface DropdownMenuProps + extends Omit { + options: DropdownMenuItem[]; + onSelect: (data?: object) => void; +} + +export function DropdownMenu(props: DropdownMenuProps) { + const { options, onSelect, children, ...other } = props; + + const content = ( + + {options.map((option) => ( + onSelect(option?.data)} + /> + ))} + + ); + + return ( + + {children} + + ); +} diff --git a/src/component/elements/ReactTable/Elements/ReactTableRow.tsx b/src/component/elements/ReactTable/Elements/ReactTableRow.tsx index 8343541f0..c6c058611 100644 --- a/src/component/elements/ReactTable/Elements/ReactTableRow.tsx +++ b/src/component/elements/ReactTable/Elements/ReactTableRow.tsx @@ -1,17 +1,17 @@ /** @jsxImportSource @emotion/react */ -import { css, CSSObject } from '@emotion/react'; +import { css, CSSObject, SerializedStyles } from '@emotion/react'; import { useMemo, useEffect, useCallback } from 'react'; -import { DropdownMenu } from 'react-science/ui'; import { HighlightEventSource, useHighlight } from '../../../highlight/index'; -import { BaseRowStyle, ContextMenuProps } from '../ReactTable'; +import { ContextMenu } from '../../ContextMenuBluePrint'; +import { BaseRowStyle, TableContextMenuProps } from '../ReactTable'; function getRowStyle( isActive: boolean, rowStyle: BaseRowStyle = {}, disableDefaultRowStyle?: boolean, -) { +): SerializedStyles { const { hover = {}, active = {}, base = {}, activated = {} } = rowStyle; const hoverStyle = disableDefaultRowStyle @@ -21,7 +21,7 @@ function getRowStyle( ? (active as CSSObject) : { backgroundColor: '#ff6f0070', ...active }; const baseStyle = disableDefaultRowStyle - ? (base as CSSObject) + ? (base as object) : { backgroundColor: 'white', ...base }; return css([ @@ -36,7 +36,7 @@ function getRowStyle( export interface ClickEvent { onClick?: (event: Event, data: unknown) => void; } -interface ReactTableRowProps extends ClickEvent, ContextMenuProps { +interface ReactTableRowProps extends ClickEvent, TableContextMenuProps { row: any; highlightedSource?: HighlightEventSource; isRowActive: boolean; @@ -89,11 +89,11 @@ function ReactTableRow(props: ReactTableRowProps) { [onClick, row], ); return ( - onContextMenuSelect?.(selected, row.original)} as="tr" + style={{ position: 'static' }} key={row.getRowProps().key} css={getRowStyle( highlight.isActive || isRowActive, @@ -127,7 +127,7 @@ function ReactTableRow(props: ReactTableRowProps) { ); } })} - + ); } diff --git a/src/component/elements/ReactTable/ReactTable.tsx b/src/component/elements/ReactTable/ReactTable.tsx index 4191514ae..22584585e 100644 --- a/src/component/elements/ReactTable/ReactTable.tsx +++ b/src/component/elements/ReactTable/ReactTable.tsx @@ -13,7 +13,6 @@ import { useEffect, useMemo, } from 'react'; -import { DropdownMenuProps } from 'react-science/ui'; import { useTable, useSortBy, @@ -28,6 +27,7 @@ import { import { useMeasure } from 'react-use'; import { HighlightEventSource } from '../../highlight'; +import { BaseContextMenuProps } from '../ContextMenuBluePrint'; import { EmptyDataRow } from './Elements/EmptyDataRow'; import ReactTableHeader from './Elements/ReactTableHeader'; @@ -69,14 +69,14 @@ export interface BaseRowStyle { base?: CSSProperties; } -export interface ContextMenuProps { +export interface TableContextMenuProps { onContextMenuSelect?: ( - selected: Parameters['onSelect']>[0], + selected: Parameters[0], data: any, ) => void; - contextMenu?: DropdownMenuProps['options']; + contextMenu?: BaseContextMenuProps['options']; } -interface ReactTableProps extends ContextMenuProps, ClickEvent, SortEvent { +interface ReactTableProps extends TableContextMenuProps, ClickEvent, SortEvent { data: any; columns: any; highlightedSource?: HighlightEventSource; diff --git a/src/component/elements/ToolbarMenu.tsx b/src/component/elements/ToolbarMenu.tsx deleted file mode 100644 index e71e56a44..000000000 --- a/src/component/elements/ToolbarMenu.tsx +++ /dev/null @@ -1,188 +0,0 @@ -/** @jsxImportSource @emotion/react */ -import { css } from '@emotion/react'; -import { - ReactNode, - useState, - useCallback, - useRef, - useLayoutEffect, -} from 'react'; -import { Toolbar } from 'react-science/ui'; - -import { BoundingBox } from './MenuButton'; - -const menuStyles = css` - .menu { - box-shadow: 0 0 10px rgb(0 0 0 / 50%); - margin: 0; - border-radius: 5px; - display: flex; - flex-direction: column; - position: absolute; - z-index: 99999; - padding: 2px; - background-color: white; - - button:hover { - background-color: #fafafa; - } - } - - .menu-cover { - position: fixed; - width: 100%; - height: 100%; - top: 0; - left: 0; - z-index: 1; - } - - .menu-item { - background-color: transparent; - border: none; - border-bottom: 0.55px solid whitesmoke; - height: 35px; - outline: outline; - display: table-cell; - vertical-align: middle; - text-align: left; - padding: 0 10px; - - svg { - display: inline-block; - } - - :focus { - outline: none !important; - } - - span { - font-size: 10px; - padding: 0 10px; - } - } -`; - -interface MenuItemProps { - icon: ReactNode; - label: string; - onClick?: () => void; -} - -function MenuItem({ icon, label, onClick }: MenuItemProps) { - return ( - - ); -} - -interface MenuListProps { - items: Array; - onClick: (element: MenuItemProps & { id: string }) => void; - boxBounding?: BoundingBox; -} - -function MenuList({ - items, - boxBounding = { x: 0, y: 0, width: 0, height: 0 }, - onClick, -}: MenuListProps) { - const listRef = useRef(); - const [translate, setTranslate] = useState({ - x: boxBounding.width, - y: boxBounding.height, - }); - - useLayoutEffect(() => { - const boxSize = listRef.current.getBoundingClientRect(); - setTranslate((oldTransform) => { - let y = boxBounding.height; - if (boxSize.bottom > window.innerHeight) { - y = boxBounding.height * 2 + (boxSize.bottom - window.innerHeight); - } - return { - ...oldTransform, - y, - }; - }); - }, [boxBounding.height]); - - return ( -
- {items?.map((item) => { - return ( - onClick(item)} /> - ); - })} -
- ); -} - -interface MenuButtonProps { - component: ReactNode; - toolTip: string; - items?: Array; - onClick?: (element: MenuItemProps & { id: string }) => void; -} - -export default function ToolbarMenu({ - component, - toolTip = '', - items = [], - onClick = () => null, -}: MenuButtonProps) { - const menuButtonRef = useRef(null); - const [isShown, showMenu] = useState(false); - - const closeMenuButton = useCallback(() => { - showMenu(false); - }, []); - - const handleClick = useCallback(() => { - showMenu((flag) => !flag); - }, []); - - const clickHandler = useCallback( - (e) => { - showMenu(false); - onClick(e); - }, - [onClick], - ); - - const boxBounding = useCallback(() => { - return menuButtonRef.current?.getBoundingClientRect(); - }, []); - - return ( -
-
- - {component} - -
- {isShown && ( - - )} - - {isShown &&
} -
- ); -} diff --git a/src/component/elements/toggle/ToggleButton.tsx b/src/component/elements/toggle/ToggleButton.tsx deleted file mode 100644 index c6182848c..000000000 --- a/src/component/elements/toggle/ToggleButton.tsx +++ /dev/null @@ -1,51 +0,0 @@ -import { useCallback, useState, useEffect, ReactElement } from 'react'; -import { Toolbar } from 'react-science/ui'; - -interface ToggleButtonProps { - isActive?: boolean; - value?: any; - onChange?: (value: any) => null; - children: ReactElement; - isVisible?: boolean; -} - -export default function ToggleButton( - props: ToggleButtonProps & { title: string; id: string }, -) { - const { - children, - value = null, - isActive = false, - onChange = () => null, - isVisible = true, - id, - title, - } = props; - - const [active, setActive] = useState(props.isActive); - - const toggleButton = useCallback(() => { - const _isActive = !active; - setActive(_isActive); - - if (_isActive) { - onChange(value); - } else { - onChange(null); - } - }, [active, onChange, value]); - - useEffect(() => { - setActive(isActive); - }, [isActive]); - - if (!isVisible) { - return null; - } - - return ( - - {children} - - ); -} diff --git a/src/component/elements/toggle/ToggleButtonGroup.tsx b/src/component/elements/toggle/ToggleButtonGroup.tsx deleted file mode 100644 index 04d741005..000000000 --- a/src/component/elements/toggle/ToggleButtonGroup.tsx +++ /dev/null @@ -1,73 +0,0 @@ -import { - useCallback, - useState, - useMemo, - useEffect, - Children, - cloneElement, - ReactNode, -} from 'react'; - -import ToggleButton from './ToggleButton'; - -interface ToggleButtonGroupProps { - children: ReactNode; - value: string; - onChange?: (value: any) => void; -} - -export default function ToggleButtonGroup({ - children, - value, - onChange = () => null, -}: ToggleButtonGroupProps) { - const [toggleButtons, setToggleButtons] = useState([]); - const handleOnChange = useCallback( - (val) => { - const _toggles: any[] = [...toggleButtons]; - const toggles = _toggles.map((toggle) => { - return { - value: toggle.value, - isActive: toggle.value === val, - }; - }); - - setToggleButtons(toggles); - onChange(val); - }, - [onChange, toggleButtons], - ); - - const mappedChildren = useMemo(() => { - let index = 0; - return Children.map(children, (child: any) => { - if (child) { - if (child.type === ToggleButton) { - const _child = cloneElement(child, { - onChange: handleOnChange, - isActive: toggleButtons[index]?.isActive, - index, - }); - index++; - return _child; - } else { - return cloneElement(child); - } - } - }); - }, [children, handleOnChange, toggleButtons]); - - useEffect(() => { - const val = Children.map(children, (child: any) => { - if (child && child.type === ToggleButton) { - return { - value: child.props.value, - isActive: child.props.value === value, - }; - } - }); - setToggleButtons(val); - }, [children, value]); - - return <>{mappedChildren}; -} diff --git a/src/component/header/Header.tsx b/src/component/header/Header.tsx index b81768de7..5ffb0d7db 100644 --- a/src/component/header/Header.tsx +++ b/src/component/header/Header.tsx @@ -154,7 +154,7 @@ function HeaderInner(props: HeaderInnerProps) { }} >
- +
@@ -179,15 +179,14 @@ function HeaderInner(props: HeaderInnerProps) { {!general?.hideLogs && }
- + {!general?.hideHelp && ( window.open(docsBaseUrl, '_blank')} - > - - + icon={} + /> )} {!hideGeneralSettings && ( @@ -199,9 +198,8 @@ function HeaderInner(props: HeaderInnerProps) { onClick={onEnableFullscreen} title="Full Screen" className="windowButton" - > - - + icon={} + /> )}
diff --git a/src/component/hooks/useCheckToolsVisibility.ts b/src/component/hooks/useCheckToolsVisibility.ts index b3a45ba5f..fc7b716d5 100644 --- a/src/component/hooks/useCheckToolsVisibility.ts +++ b/src/component/hooks/useCheckToolsVisibility.ts @@ -12,7 +12,7 @@ import useSpectrum from './useSpectrum'; type SpectrumInfo = Info1D | Info2D; -interface CheckOptions { +export interface CheckOptions { checkSpectrumType?: boolean; checkMode?: boolean; extraInfoCheckParameters?: SpectrumInfo; diff --git a/src/component/hooks/usePanelPreferences.ts b/src/component/hooks/usePanelPreferences.ts index 1e9219181..e116b660a 100644 --- a/src/component/hooks/usePanelPreferences.ts +++ b/src/component/hooks/usePanelPreferences.ts @@ -128,8 +128,8 @@ export function usePanelPreferences( ): T extends 'matrixGeneration' ? MatrixOptions : T extends 'multipleSpectraAnalysis' - ? MultipleSpectraAnalysisPreferences - : WorkSpacePanelPreferences[T]; + ? MultipleSpectraAnalysisPreferences + : WorkSpacePanelPreferences[T]; export function usePanelPreferences( panelKey: T, ): WorkSpacePanelPreferences[T]; @@ -149,18 +149,18 @@ export type UsePanelPreferencesByNucleiResult = T extends 'spectra' ? PanelsPreferences['spectra'] : T extends 'peaks' - ? PanelsPreferences['peaks'] - : T extends 'integrals' - ? PanelsPreferences['integrals'] - : T extends 'zones' - ? PanelsPreferences['zones'] - : T extends 'ranges' - ? PanelsPreferences['ranges'] - : T extends 'multipleSpectraAnalysis' - ? PanelsPreferences['multipleSpectraAnalysis'] - : T extends 'matrixGeneration' - ? PanelsPreferences['matrixGeneration'] - : void; + ? PanelsPreferences['peaks'] + : T extends 'integrals' + ? PanelsPreferences['integrals'] + : T extends 'zones' + ? PanelsPreferences['zones'] + : T extends 'ranges' + ? PanelsPreferences['ranges'] + : T extends 'multipleSpectraAnalysis' + ? PanelsPreferences['multipleSpectraAnalysis'] + : T extends 'matrixGeneration' + ? PanelsPreferences['matrixGeneration'] + : void; export function usePanelPreferencesByNuclei( panelKey: T, diff --git a/src/component/modal/PredictSpectraModal.tsx b/src/component/modal/PredictSpectraModal.tsx index 837ecde02..898849447 100644 --- a/src/component/modal/PredictSpectraModal.tsx +++ b/src/component/modal/PredictSpectraModal.tsx @@ -1,8 +1,9 @@ /** @jsxImportSource @emotion/react */ +import { Checkbox } from '@blueprintjs/core'; import { css } from '@emotion/react'; import { SvgNmrFt } from 'cheminfo-font'; import { useCallback, useRef, useState, useMemo } from 'react'; -import { Checkbox, CheckedState, Modal, useOnOff } from 'react-science/ui'; +import { Modal, useOnOff } from 'react-science/ui'; import { getDefaultPredictionOptions, @@ -65,7 +66,7 @@ export function PredictSpectraModal({ useStateWithLocalStorage('nmrium-prediction-preferences'); const { isApproved: isAgree = false, ...options } = predictionPreferences; - const [isApproved, setApproved] = useState(isAgree); + const [isApproved, setApproved] = useState(isAgree); const { toolOptions: { data: { predictionIndex }, @@ -174,9 +175,8 @@ export function PredictSpectraModal({

setApproved(value.target.checked)} checked={isApproved} - key={String(isApproved)} label="I confirm that the chemical structure is not confidential." />
diff --git a/src/component/modal/aboutUs/AboutUsModal.tsx b/src/component/modal/aboutUs/AboutUsModal.tsx index c1948076a..93dfc7c34 100644 --- a/src/component/modal/aboutUs/AboutUsModal.tsx +++ b/src/component/modal/aboutUs/AboutUsModal.tsx @@ -96,20 +96,10 @@ function AboutUsModal() { <> + icon={} + /> range.from && value < range.to) { return true; diff --git a/src/component/modal/editRange/forms/validation/EditRangeValidation.ts b/src/component/modal/editRange/forms/validation/EditRangeValidation.ts index eef97b572..f78330c7e 100644 --- a/src/component/modal/editRange/forms/validation/EditRangeValidation.ts +++ b/src/component/modal/editRange/forms/validation/EditRangeValidation.ts @@ -14,8 +14,10 @@ const editRangeFormValidation = Yup.object().shape({ 'checkValue', '', function testCoupling(value) { + // eslint-disable-next-line no-invalid-this const { path, createError } = this; const hasCoupling = hasCouplingConstant( + // eslint-disable-next-line no-invalid-this this.parent.multiplicity, ); if ((!hasCoupling && !value) || (hasCoupling && value)) { diff --git a/src/component/modal/metaImportation/MetaImportationModal.tsx b/src/component/modal/metaImportation/MetaImportationModal.tsx index 08fd29c4d..479da957c 100644 --- a/src/component/modal/metaImportation/MetaImportationModal.tsx +++ b/src/component/modal/metaImportation/MetaImportationModal.tsx @@ -224,8 +224,7 @@ function MetaImportationModal({ onClose, file }: MetaImportationModalProps) { {!parseResult ? ( ) : ( diff --git a/src/component/modal/setting/GeneralSettings.tsx b/src/component/modal/setting/GeneralSettings.tsx index 4c9cb6c6d..7489f8997 100644 --- a/src/component/modal/setting/GeneralSettings.tsx +++ b/src/component/modal/setting/GeneralSettings.tsx @@ -288,9 +288,9 @@ function GeneralSettingsModal({ height }: GeneralSettingsModalProps) { id="general-settings" onClick={openDialog} title="General settings" - > - - + icon={} + /> + new ValidationError( `${key} nucleus must te be unique`, nuclei[key].name, + // eslint-disable-next-line no-invalid-this `${this.path}.${field}.name`, ), ); diff --git a/src/component/panels/MoleculesPanel/MoleculePanelHeader.tsx b/src/component/panels/MoleculesPanel/MoleculePanelHeader.tsx index 3b85386a3..042794017 100644 --- a/src/component/panels/MoleculesPanel/MoleculePanelHeader.tsx +++ b/src/component/panels/MoleculesPanel/MoleculePanelHeader.tsx @@ -11,7 +11,6 @@ import { FaRegTrashAlt, } from 'react-icons/fa'; import { IoOpenOutline } from 'react-icons/io5'; -import { DropdownMenuProps, DropdownMenu } from 'react-science/ui'; import { MoleculesView, @@ -25,6 +24,7 @@ import { useDispatch } from '../../context/DispatchContext'; import { useGlobal } from '../../context/GlobalContext'; import ActiveButton from '../../elements/ActiveButton'; import Button from '../../elements/Button'; +import { DropdownMenu, DropdownMenuProps } from '../../elements/DropdownMenu'; import { useAlert } from '../../elements/popup/Alert'; import AboutPredictionModal from '../../modal/AboutPredictionModal'; import PredictSpectraModal from '../../modal/PredictSpectraModal'; @@ -49,39 +49,31 @@ const styles: Record<'counter' | 'atomLabel', CSSProperties> = { }, }; -const LabelWrapper = ({ children }) => { - return

{children}

; -}; - -const MOL_EXPORT_MENU: DropdownMenuProps<{ id: string }, void>['options'] = [ +const MOL_EXPORT_MENU: DropdownMenuProps['options'] = [ { - type: 'option', icon: , - label: Copy as molfile V3, + text: 'Copy as molfile V3', data: { id: 'molfileV3', }, }, { - type: 'option', icon: , - label: Copy as molfile V2, + text: 'Copy as molfile V2', data: { id: 'molfileV2', }, }, { - type: 'option', icon: , - label: Copy as PNG, + text: 'Copy as PNG', data: { id: 'png', }, }, { - type: 'option', icon: , - label: Export as SVG, + text: 'Export as SVG', data: { id: 'svg', }, @@ -145,7 +137,7 @@ export default function MoleculePanelHeader({ (selected) => { const molecule = molecules?.[currentIndex]; if (molecule) { - switch (selected?.data.id) { + switch (selected?.id) { case 'molfileV3': saveAsMolHandler(molecule.molfile); break; @@ -222,11 +214,7 @@ export default function MoleculePanelHeader({ {renderSource === 'predictionPanel' && } {renderSource === 'moleculePanel' && ( - + ['options'] = [ +const rangesContextMenuOptions: BaseContextMenuProps['options'] = [ { - label: 'Copy to Clipboard', - type: 'option', + text: 'Copy to Clipboard', icon: , }, ]; diff --git a/src/component/panels/RangesPanel/RangesTable.tsx b/src/component/panels/RangesPanel/RangesTable.tsx index 4cdf21084..464e3aafa 100644 --- a/src/component/panels/RangesPanel/RangesTable.tsx +++ b/src/component/panels/RangesPanel/RangesTable.tsx @@ -4,7 +4,7 @@ import { WorkSpacePanelPreferences } from 'nmr-load-save'; import { Info1D } from 'nmr-processing'; import { FaLink } from 'react-icons/fa'; -import { ContextMenuProps } from '../../elements/ReactTable/ReactTable'; +import { TableContextMenuProps } from '../../elements/ReactTable/ReactTable'; import useTableSortBy from '../../hooks/useTableSortBy'; import NoDataForFid from '../extra/placeholder/NoDataForFid'; import NoTableData from '../extra/placeholder/NoTableData'; @@ -56,7 +56,7 @@ const tableStyle = css` } } `; -interface RangesTableProps extends ContextMenuProps { +interface RangesTableProps extends TableContextMenuProps { onUnlink: (a: any, b?: any) => void; preferences: WorkSpacePanelPreferences['ranges']; tableData: any; diff --git a/src/component/panels/RangesPanel/RangesTableRow.tsx b/src/component/panels/RangesPanel/RangesTableRow.tsx index 2f2087a2d..fe4ad03f3 100644 --- a/src/component/panels/RangesPanel/RangesTableRow.tsx +++ b/src/component/panels/RangesPanel/RangesTableRow.tsx @@ -4,7 +4,6 @@ import lodashGet from 'lodash/get'; import { WorkSpacePanelPreferences } from 'nmr-load-save'; import { Info1D } from 'nmr-processing'; import { useMemo, useCallback, MouseEvent, CSSProperties } from 'react'; -import { DropdownMenu } from 'react-science/ui'; import { AssignmentsData, @@ -12,7 +11,8 @@ import { useAssignmentData, } from '../../assignment/AssignmentsContext'; import { filterForIDsWithAssignment } from '../../assignment/utilities/filterForIDsWithAssignment'; -import { ContextMenuProps } from '../../elements/ReactTable/ReactTable'; +import { ContextMenu } from '../../elements/ContextMenuBluePrint'; +import { TableContextMenuProps } from '../../elements/ReactTable/ReactTable'; import { HighlightEventSource, useHighlight, @@ -38,7 +38,7 @@ const ConstantlyHighlightedRowStyle = css` background-color: #f5f5dc; `; -interface RangesTableRowProps extends ContextMenuProps { +interface RangesTableRowProps extends TableContextMenuProps { rowData: any; onUnlink: (a: any, b?: any) => void; preferences: WorkSpacePanelPreferences['ranges']; @@ -184,13 +184,12 @@ function RangesTableRow({ return highlightRange.isActive || assignmentRange.isActive ? HighlightedRowStyle : lodashGet(rowData, 'tableMetaInfo.isConstantlyHighlighted', false) - ? ConstantlyHighlightedRowStyle - : null; + ? ConstantlyHighlightedRowStyle + : null; }, [assignmentRange.isActive, highlightRange.isActive, rowData]); return ( - onContextMenuSelect?.(selected, rowData)} as="tr" @@ -302,7 +301,7 @@ function RangesTableRow({ showEditAction={preferences.showEditAction} showZoomAction={preferences.showZoomAction} /> - + ); } diff --git a/src/component/panels/RangesPanel/TableColumns/SignalDeltaHzColumn.tsx b/src/component/panels/RangesPanel/TableColumns/SignalDeltaHzColumn.tsx index c2db8b888..7f3020770 100644 --- a/src/component/panels/RangesPanel/TableColumns/SignalDeltaHzColumn.tsx +++ b/src/component/panels/RangesPanel/TableColumns/SignalDeltaHzColumn.tsx @@ -25,8 +25,8 @@ function SignalDeltaHzColumn({ format, )} - ${formatNumber(row.to * info.originFrequency, format)}` : info?.originFrequency - ? formatNumber(signal.delta * info.originFrequency, format) - : ''} + ? formatNumber(signal.delta * info.originFrequency, format) + : ''} ); } diff --git a/src/component/panels/SpectrumsPanel/SpectraTable.tsx b/src/component/panels/SpectrumsPanel/SpectraTable.tsx index 93e2a310b..bd02de839 100644 --- a/src/component/panels/SpectrumsPanel/SpectraTable.tsx +++ b/src/component/panels/SpectrumsPanel/SpectraTable.tsx @@ -10,11 +10,14 @@ import { import { useMemo, CSSProperties, useCallback, useState } from 'react'; import { FaCopy, FaRegTrashAlt, FaFileExport } from 'react-icons/fa'; import { IoColorPaletteOutline } from 'react-icons/io5'; -import { DropdownMenu, DropdownMenuProps } from 'react-science/ui'; import { ClipboardFallbackModal } from '../../../utils/clipboard/clipboardComponents'; import { useClipboard } from '../../../utils/clipboard/clipboardHooks'; import { useDispatch } from '../../context/DispatchContext'; +import { + ContextMenu, + ContextMenuItem, +} from '../../elements/ContextMenuBluePrint'; import ReactTable, { Column } from '../../elements/ReactTable/ReactTable'; import { useAlert } from '../../elements/popup/Alert'; import { usePanelPreferences } from '../../hooks/usePanelPreferences'; @@ -58,10 +61,9 @@ interface SpectraTableProps extends OnChangeVisibilityEvent { nucleus: string; } -const options: DropdownMenuProps['options'] = [ +const options: ContextMenuItem[] = [ { - label: 'Recolor based on distinct value', - type: 'option', + text: 'Recolor based on distinct value', icon: , }, ]; @@ -72,32 +74,28 @@ enum SpectraContextMenuOptionsKeys { ExportAsJcamp = 'ExportAsJcamp', } -const Spectra2DContextMenuOptions: DropdownMenuProps['options'] = [ +const Spectra2DContextMenuOptions: ContextMenuItem[] = [ { - label: 'Copy to Clipboard', - type: 'option', + text: 'Copy to Clipboard', icon: , data: { id: SpectraContextMenuOptionsKeys.CopyToClipboard }, }, { - label: 'Delete', - type: 'option', + text: 'Delete', icon: , data: { id: SpectraContextMenuOptionsKeys.Delete }, }, { - label: 'Export as jcamp', - type: 'option', + text: 'Export as jcamp', icon: , data: { id: SpectraContextMenuOptionsKeys.ExportAsJcamp }, }, ]; -const Spectra1DContextMenuOptions: DropdownMenuProps['options'] = [ +const Spectra1DContextMenuOptions: ContextMenuItem[] = [ ...Spectra2DContextMenuOptions, { - label: 'Export as jcamp', - type: 'option', + text: 'Export as jcamp', icon: , data: { id: SpectraContextMenuOptionsKeys.ExportAsJcamp }, }, @@ -200,7 +198,7 @@ export function SpectraTable(props: SpectraTableProps) { const selectContextMenuHandler = useCallback( (option, spectrum) => { - const { id } = option.data; + const { id } = option; switch (id) { case SpectraContextMenuOptionsKeys.CopyToClipboard: { void (async () => { @@ -349,20 +347,16 @@ const ColumnHeader = ({ } return ( - -
- {label} -
- + {label} + ); }; diff --git a/src/component/panels/SummaryPanel/CorrelationTable/AdditionalColumnField.tsx b/src/component/panels/SummaryPanel/CorrelationTable/AdditionalColumnField.tsx index d94f88004..57fba7b90 100644 --- a/src/component/panels/SummaryPanel/CorrelationTable/AdditionalColumnField.tsx +++ b/src/component/panels/SummaryPanel/CorrelationTable/AdditionalColumnField.tsx @@ -231,8 +231,8 @@ function AdditionalColumnField({ backgroundColor: highlightCommonLinks.isActive ? '#ff6f0057' : isInViewColumn || isInViewRow - ? '#f5f5dc' - : 'inherit', + ? '#f5f5dc' + : 'inherit', }} title={getTitle(commonLinks)} onMouseEnter={mouseEnterHandler} diff --git a/src/component/panels/SummaryPanel/CorrelationTable/AdditionalColumnHeader.tsx b/src/component/panels/SummaryPanel/CorrelationTable/AdditionalColumnHeader.tsx index 387cc98aa..2848b3ce3 100644 --- a/src/component/panels/SummaryPanel/CorrelationTable/AdditionalColumnHeader.tsx +++ b/src/component/panels/SummaryPanel/CorrelationTable/AdditionalColumnHeader.tsx @@ -81,8 +81,8 @@ function AdditionalColumnHeader({ backgroundColor: highlightAdditionalColumn.isActive ? '#ff6f0057' : isInView - ? '#f5f5dc' - : 'inherit', + ? '#f5f5dc' + : 'inherit', }, title: correlation.pseudo === false && title, onMouseEnter: mouseEnterHandler, diff --git a/src/component/panels/SummaryPanel/CorrelationTable/CorrelationTableRow.tsx b/src/component/panels/SummaryPanel/CorrelationTable/CorrelationTableRow.tsx index 49546843f..8ea9e4403 100644 --- a/src/component/panels/SummaryPanel/CorrelationTable/CorrelationTableRow.tsx +++ b/src/component/panels/SummaryPanel/CorrelationTable/CorrelationTableRow.tsx @@ -169,8 +169,8 @@ function CorrelationTableRow({ backgroundColor: highlightRow.isActive ? '#ff6f0057' : isInView - ? '#f5f5dc' - : 'inherit', + ? '#f5f5dc' + : 'inherit', }, title: correlation.pseudo === false && title, onMouseEnter: mouseEnterHandler, diff --git a/src/component/panels/SummaryPanel/Overview.tsx b/src/component/panels/SummaryPanel/Overview.tsx index bbaa82600..49b207c4b 100644 --- a/src/component/panels/SummaryPanel/Overview.tsx +++ b/src/component/panels/SummaryPanel/Overview.tsx @@ -52,8 +52,8 @@ function Overview({ correlationsData }: OverviewProps) { (!error || Object.keys(error).length === 0) ? 'green' : errorColorIndex >= 0 - ? ErrorColors[errorColorIndex].color - : 'black' + ? ErrorColors[errorColorIndex].color + : 'black' : 'black', }} > diff --git a/src/component/panels/ZonesPanel/ZonesTableRow.tsx b/src/component/panels/ZonesPanel/ZonesTableRow.tsx index 59eb07fd3..92cebe454 100644 --- a/src/component/panels/ZonesPanel/ZonesTableRow.tsx +++ b/src/component/panels/ZonesPanel/ZonesTableRow.tsx @@ -2,7 +2,6 @@ import lodashGet from 'lodash/get'; import { CSSProperties, useMemo, useCallback, MouseEvent } from 'react'; -import { DropdownMenu } from 'react-science/ui'; import { buildID } from '../../../data/utilities/Concatenation'; import { @@ -10,7 +9,8 @@ import { useAssignment, AssignmentsData, } from '../../assignment/AssignmentsContext'; -import { ContextMenuProps } from '../../elements/ReactTable/ReactTable'; +import { ContextMenu } from '../../elements/ContextMenuBluePrint'; +import { TableContextMenuProps } from '../../elements/ReactTable/ReactTable'; import { useHighlight } from '../../highlight'; import { usePanelPreferences } from '../../hooks/usePanelPreferences'; @@ -24,7 +24,7 @@ const HighlightedRowStyle: CSSProperties = { backgroundColor: '#ff6f0057' }; const ConstantlyHighlightedRowStyle = { backgroundColor: '#f5f5dc' }; -interface ZonesTableRowProps extends ContextMenuProps { +interface ZonesTableRowProps extends TableContextMenuProps { rowData: ZoneData; onUnlink: ( rowData: ZoneData, @@ -179,8 +179,7 @@ function ZonesTableRow({ }, [assignmentSignal, highlightSignalY]); return ( - onContextMenuSelect?.(selected, rowData)} as="tr" @@ -188,8 +187,8 @@ function ZonesTableRow({ highlightZone.isActive || assignmentZone.isActive ? (HighlightedRowStyle as any) : lodashGet(rowData, 'tableMetaInfo.isConstantlyHighlighted', false) - ? ConstantlyHighlightedRowStyle - : null + ? ConstantlyHighlightedRowStyle + : null } {...highlightZone.onHover} > @@ -230,7 +229,7 @@ function ZonesTableRow({ rowSpanTags={rowSpanTags} {...{ showKind, showDeleteAction, showEditAction, showZoomAction }} /> - + ); } diff --git a/src/component/panels/extra/preferences/ColumnsHelper.ts b/src/component/panels/extra/preferences/ColumnsHelper.ts index 91bf63fa7..d1fde967c 100644 --- a/src/component/panels/extra/preferences/ColumnsHelper.ts +++ b/src/component/panels/extra/preferences/ColumnsHelper.ts @@ -48,8 +48,7 @@ export default class ColumnsHelper { if (this.checkPreferences(preferences, flagKey)) { this.setCustomColumn(columns, columnIndex, columnLabel, (row) => { const format = - preferences && - Object.prototype.hasOwnProperty.call(preferences, formatKey) + preferences && Object.hasOwn(preferences, formatKey) ? preferences[formatKey] : this.defaultPreference[formatKey]; diff --git a/src/component/panels/filtersPanel/FiltersTable.tsx b/src/component/panels/filtersPanel/FiltersTable.tsx index ee9d8d9e0..af1946a2a 100644 --- a/src/component/panels/filtersPanel/FiltersTable.tsx +++ b/src/component/panels/filtersPanel/FiltersTable.tsx @@ -1,8 +1,8 @@ +import { Checkbox } from '@blueprintjs/core'; import { Filter } from 'nmr-processing'; import { useMemo, useCallback, memo, useRef } from 'react'; import { FaRegTrashAlt } from 'react-icons/fa'; import { ObjectInspector } from 'react-inspector'; -import { Checkbox } from 'react-science/ui'; import { useChartData } from '../../context/ChartContext'; import { useDispatch } from '../../context/DispatchContext'; diff --git a/src/component/panels/multipleAnalysisPanel/preferences/index.tsx b/src/component/panels/multipleAnalysisPanel/preferences/index.tsx index e158d0d4e..c71c036ee 100644 --- a/src/component/panels/multipleAnalysisPanel/preferences/index.tsx +++ b/src/component/panels/multipleAnalysisPanel/preferences/index.tsx @@ -157,6 +157,7 @@ function columnSchema(columns) { new Yup.ValidationError( `${key} nucleus must te be unique`, key, + // eslint-disable-next-line no-invalid-this this.path, ), ); @@ -178,6 +179,7 @@ function columnSchema(columns) { new Yup.ValidationError( `${column.tempKey} formula value is required`, column.formula, + // eslint-disable-next-line no-invalid-this this.path, ), ); diff --git a/src/component/toolbar/BasicToolBar.tsx b/src/component/toolbar/BasicToolBar.tsx index 25888f854..542f68282 100644 --- a/src/component/toolbar/BasicToolBar.tsx +++ b/src/component/toolbar/BasicToolBar.tsx @@ -19,7 +19,7 @@ import { Toolbar, useOnOff } from 'react-science/ui'; import { useChartData } from '../context/ChartContext'; import { useLoader } from '../context/LoaderContext'; -import ToolbarMenu from '../elements/ToolbarMenu'; +import { DropdownMenu, DropdownMenuProps } from '../elements/DropdownMenu'; import { useModal } from '../elements/popup/Modal'; import useCheckExperimentalFeature from '../hooks/useCheckExperimentalFeature'; import { useCheckToolsVisibility } from '../hooks/useCheckToolsVisibility'; @@ -32,59 +32,81 @@ import { LoadJCAMPModal } from '../modal/LoadJCAMPModal'; import { useMetaInformationImportationModal } from '../modal/metaImportation/index'; import { VerticalAlignment } from '../reducer/Reducer'; -const IMPORT_MENU = [ +import { options } from './ToolTypes'; + +const IMPORT_MENU: DropdownMenuProps['options'] = [ { - id: 'importFile', icon: , - label: 'Import from file system (Press Ctrl + O)', + text: 'Import from file system (Press Ctrl + O)', + data: { + id: 'importFile', + }, }, { - id: 'importJDX', icon: , - label: 'Add JCAMP-DX from URL', + text: 'Add JCAMP-DX from URL', + data: { + id: 'importJDX', + }, }, { - id: 'importPublicationString', icon: , - label: 'Import from publication string', + text: 'Import from publication string', + data: { + id: 'importPublicationString', + }, }, { - id: 'importMetaInformation', icon: , - label: 'Import meta information', + text: 'Import meta information', + data: { + id: 'importMetaInformation', + }, }, ]; -const EXPORT_MENU = [ +const EXPORT_MENU: DropdownMenuProps['options'] = [ { - id: 'svg', icon: , - label: 'Export as SVG', + text: 'Export as SVG', + data: { + id: 'svg', + }, }, { - id: 'png', icon: , - label: 'Export as PNG', + text: 'Export as PNG', + data: { + id: 'png', + }, }, { - id: 'json', icon: , - label: 'Save data ( Press Ctrl + S )', + text: 'Save data ( Press Ctrl + S )', + data: { + id: 'json', + }, }, { - id: 'advance_save', icon: , - label: 'Save data as ( Press Ctrl + Shift + S )', + text: 'Save data as ( Press Ctrl + Shift + S )', + data: { + id: 'advance_save', + }, }, { - id: 'nmre', icon: , - label: 'Save NMRE data', + text: 'Save NMRE data', + data: { + id: 'nmre', + }, }, { - id: 'copy', icon: , - label: 'Copy image to Clipboard ( Press Ctrl + C )', + text: 'Copy image to Clipboard ( Press Ctrl + C )', + data: { + id: 'copy', + }, }, ]; @@ -142,8 +164,8 @@ function BasicToolBarInner({ }, [modal]); const importHandler = useCallback( - ({ id }) => { - switch (id) { + (data) => { + switch (data?.id) { case 'importFile': openLoader(); break; @@ -168,8 +190,8 @@ function BasicToolBarInner({ ); const exportHandler = useCallback( - ({ id }) => { - switch (id) { + (data) => { + switch (data?.id) { case 'svg': void saveAsSVGHandler(); break; @@ -207,25 +229,39 @@ function BasicToolBarInner({ /> {isButtonVisible('import') && ( - } - toolTip="Import" - onClick={(element) => { - importHandler(element); - return null; + { + importHandler(data); }} - items={importMenu} + options={importMenu} + renderTarget={(targetProps) => ( +
+ } + /> +
+ )} /> )} {isButtonVisible('exportAs') && ( - } - toolTip="Export As" - onClick={(element) => { - exportHandler(element); - return null; + { + exportHandler(data); }} - items={exportMenu} + placement="right" + options={exportMenu} + renderTarget={(targetProps) => ( +
+ } + /> +
+ )} /> )} @@ -235,13 +271,14 @@ function BasicToolBarInner({ className="cheminfo" title="Spectra alignment ( Press s )" onClick={changeDisplayViewModeHandler} - > - {verticalAlign === 'stack' ? ( - - ) : ( - - )} - + icon={ + verticalAlign === 'stack' ? ( + + ) : ( + + ) + } + /> )} {isButtonVisible('realImaginary') && ( - - + icon={} + /> )} {isButtonVisible('spectraCenterAlignments') && (ftCounter > 0 || fidCounter > 0) && ( @@ -264,15 +300,16 @@ function BasicToolBarInner({ } onClick={alignSpectrumsVerticallyHandler} className="cheminfo" - > -
- {verticalAlign === 'bottom' ? ( - - ) : ( - - )} -
- + icon={ + <> + {verticalAlign === 'bottom' ? ( + + ) : ( + + )} + + } + /> )} ); diff --git a/src/component/toolbar/FunctionToolBar.tsx b/src/component/toolbar/FunctionToolBar.tsx index c5741d92f..ad9d4cbf7 100644 --- a/src/component/toolbar/FunctionToolBar.tsx +++ b/src/component/toolbar/FunctionToolBar.tsx @@ -9,15 +9,17 @@ import { SvgNmrRangePicking, SvgNmrZeroFilling, } from 'cheminfo-font'; +import { NMRiumToolBarPreferences } from 'nmr-load-save'; import { useState, useEffect, useCallback, memo } from 'react'; import { FaSearchPlus, FaExpand, FaDiceFour } from 'react-icons/fa'; -import { Toolbar } from 'react-science/ui'; +import { Toolbar, ToolbarItemProps } from 'react-science/ui'; import { useChartData } from '../context/ChartContext'; import { useDispatch } from '../context/DispatchContext'; -import ToggleButton from '../elements/toggle/ToggleButton'; -import ToggleButtonGroup from '../elements/toggle/ToggleButtonGroup'; -import { useCheckToolsVisibility } from '../hooks/useCheckToolsVisibility'; +import { + CheckOptions, + useCheckToolsVisibility, +} from '../hooks/useCheckToolsVisibility'; import useDatumWithSpectraStatistics from '../hooks/useDatumWithSpectraStatistics'; import useToolsFunctions from '../hooks/useToolsFunctions'; @@ -28,6 +30,15 @@ interface FunctionToolBarInnerProps { ftCounter: number; } +interface ToolItemConfig { + id: keyof NMRiumToolBarPreferences; + label: string; + onClick?: () => void; + icon: ToolbarItemProps['icon']; + checkOptions?: CheckOptions; + condition?: boolean; +} + function FunctionToolBarInner({ defaultValue, ftCounter, @@ -69,190 +80,121 @@ function FunctionToolBarInner({ }); }, [dispatch]); + const toolItems: ToolItemConfig[] = [ + { + id: 'zoom', + label: options.zoom.label, + icon: , + }, + { + id: 'zoomOut', + label: options.zoomOut.label, + onClick: handleFullZoomOut, + icon: , + }, + { + id: 'peakPicking', + label: `${options.peakPicking.label} ( Press p )`, + icon: , + }, + { + id: 'integral', + label: `${options.integral.label} ( Press i )`, + icon: , + }, + { + id: 'zonePicking', + label: `${options.zonePicking.label} ( Press r )`, + icon: , + }, + { + id: 'slicing', + label: options.slicing.label, + icon:

Slic

, + }, + { + id: 'rangePicking', + label: `${options.rangePicking.label} ( Press r )`, + icon: , + }, + { + id: 'multipleSpectraAnalysis', + label: options.multipleSpectraAnalysis.label, + icon: , + checkOptions: { checkSpectrumType: false }, + condition: ftCounter > 1, + }, + { + id: 'apodization', + label: `${options.apodization.label} (Press a)`, + icon: , + }, + { + id: 'zeroFilling', + label: `${options.zeroFilling.label} ( Press z )`, + icon: , + }, + { + id: 'phaseCorrection', + label: `${options.phaseCorrection.label} ( Press a )`, + icon: , + }, + { + id: 'phaseCorrectionTwoDimensions', + label: `${options.phaseCorrectionTwoDimensions.label} ( Press a )`, + icon: , + }, + { + id: 'baselineCorrection', + label: `${options.baselineCorrection.label} ( Press b )`, + icon: , + }, + { + id: 'exclusionZones', + label: `${options.exclusionZones.label} ( Press e )`, + icon: , + checkOptions: { checkSpectrumType: false }, + condition: ftCounter > 0, + }, + { + id: 'fft', + label: `${options.fft.label} ( Press t )`, + onClick: handleOnFFTFilter, + icon: , + }, + { + id: 'fftDimension1', + label: options.fftDimension1.label, + onClick: handleFFtDimension1Filter, + icon: , + }, + { + id: 'fftDimension2', + label: options.fftDimension2.label, + onClick: handleFFtDimension2Filter, + icon: , + }, + ]; + return ( <> - - {isButtonVisible('zoom') && ( - - - - )} - - {isButtonVisible('zoomOut') && ( - - - - )} - - {isButtonVisible('peakPicking') && ( - - - - )} - {isButtonVisible('integral') && ( - - - - )} - {isButtonVisible('zonePicking') && ( - - - - )} - {isButtonVisible('slicing') && ( - -

Slic

- - )} - {isButtonVisible('rangePicking') && ( - - - - )} - {isButtonVisible('multipleSpectraAnalysis', { - checkSpectrumType: false, - }) && - ftCounter > 1 && ( - - - - )} - {isButtonVisible('apodization') && ( - - - - )} - {isButtonVisible('zeroFilling') && ( - - - - )} - {isButtonVisible('phaseCorrection') && ( - - - - )} - {isButtonVisible('phaseCorrectionTwoDimensions') && ( - - - - )} - - {isButtonVisible('baselineCorrection') && ( - - - - )} - - {isButtonVisible('exclusionZones', { checkSpectrumType: false }) && - ftCounter > 0 && ( - -
- -
- - )} - - - {isButtonVisible('fft') && ( - - - - )} - {isButtonVisible('fftDimension1') && ( - - - - )} - {isButtonVisible('fftDimension2') && ( - - - - )} + {toolItems.map((item) => { + const { id, icon, label, checkOptions, onClick, condition } = item; + + return ( + isButtonVisible(id, checkOptions) && + (condition === undefined || condition) && ( + handleChange(id))} + title={label} + id={id} + active={option === id} + icon={icon} + /> + ) + ); + })} ); } diff --git a/src/component/toolbar/ToolBar.tsx b/src/component/toolbar/ToolBar.tsx index 560af9839..fef2c6172 100644 --- a/src/component/toolbar/ToolBar.tsx +++ b/src/component/toolbar/ToolBar.tsx @@ -12,7 +12,7 @@ interface ToolBarInnerProps { function ToolBarInner({ selectedTool }: ToolBarInnerProps) { return ( - + diff --git a/src/data/SpectraManager.ts b/src/data/SpectraManager.ts index 746c91520..7b879d668 100644 --- a/src/data/SpectraManager.ts +++ b/src/data/SpectraManager.ts @@ -114,8 +114,8 @@ export function toJSON( dataType === 'ROW_DATA' ? 'rawData' : dataType === 'NO_DATA' - ? 'noData' - : 'dataSource'; + ? 'noData' + : 'dataSource'; return serializeNmriumState(nmriumState, { includeData, diff --git a/src/data/data2d/Processing2D.ts b/src/data/data2d/Processing2D.ts deleted file mode 100644 index 710ae465c..000000000 --- a/src/data/data2d/Processing2D.ts +++ /dev/null @@ -1,194 +0,0 @@ -import { NmrData2DFt } from 'cheminfo-types'; -import { Conrec } from 'ml-conrec'; - -import { calculateSanPlot } from '../utilities/calculateSanPlot'; - -export const defaultContourOptions = { - positive: { - contourLevels: [0, 21], - numberOfLayers: 10, - }, - negative: { - contourLevels: [0, 21], - numberOfLayers: 10, - }, -}; - -export default class Processing2D { - private options: any; - private currentLevelPositive: number; - private currentLevelNegative: number; - private conrec: Conrec; - private median: number; - private minMax: any; - - public constructor( - minMax: any, - options: any = defaultContourOptions, - defaultLevel: any = {}, - ) { - this.options = options; - - const { positive = 10, negative = 10 } = defaultLevel; - - this.currentLevelPositive = positive; - this.currentLevelNegative = negative; - - const xs = getRange(minMax.minX, minMax.maxX, minMax.z[0].length); - - const ys = getRange(minMax.minY, minMax.maxY, minMax.z.length); - - this.conrec = new Conrec(minMax.z, { xs, ys, swapAxes: false }); - - const sanResult = calculateSanPlot('2D', minMax as NmrData2DFt['rr']); - this.median = sanResult.positive; - - this.minMax = minMax; - } - - public getLevel() { - return { - levelPositive: this.currentLevelPositive, - levelNegative: this.currentLevelNegative, - }; - } - - public setLevel(levelPositive, levelNegative) { - this.currentLevelPositive = levelPositive; - this.currentLevelNegative = levelNegative; - } - - public setOptions(options) { - const positiveBoundary = options.positive.contourLevels; - const negativeBoundary = options.negative.contourLevels; - - if (this.currentLevelPositive >= positiveBoundary[1]) { - this.currentLevelPositive = positiveBoundary[1]; - } else if (this.currentLevelPositive <= positiveBoundary[0]) { - this.currentLevelPositive = positiveBoundary[0]; - } - - if (this.currentLevelNegative >= negativeBoundary[1]) { - this.currentLevelNegative = negativeBoundary[1]; - } else if (this.currentLevelNegative <= negativeBoundary[0]) { - this.currentLevelNegative = negativeBoundary[0]; - } - - this.options = options; - } - - public wheel(value) { - const sign = Math.sign(value); - const positiveBoundary = this.options.positive.contourLevels; - const negativeBoundary = this.options.negative.contourLevels; - - if ( - (this.currentLevelPositive > positiveBoundary[0] && sign === -1) || - (this.currentLevelPositive < positiveBoundary[1] && sign === 1) - ) { - this.currentLevelPositive += sign; - } - - if ( - (this.currentLevelNegative > negativeBoundary[0] && sign === -1) || - (this.currentLevelNegative < negativeBoundary[1] && sign === 1) - ) { - this.currentLevelNegative += sign; - } - } - - public shiftWheel(value) { - const sign = Math.sign(value); - const [min, max] = this.options.positive.contourLevels; - if ( - (this.currentLevelPositive === min && sign === -1) || - (this.currentLevelPositive >= max && sign === 1) - ) { - return; - } - - this.currentLevelPositive += sign; - return []; - } - - public drawContours() { - const zoomPositive = this.currentLevelPositive / 2 + 1; - const zoomNegative = this.currentLevelNegative / 2 + 1; - const { - positive: { numberOfLayers: numberOfPositiveLayer }, - negative: { numberOfLayers: numberOfNegativeLayer }, - } = this.options; - return { - positive: this.getContours(zoomPositive, { - nbLevels: numberOfPositiveLayer, - }), - negative: this.getContours(zoomNegative, { - negative: true, - nbLevels: numberOfNegativeLayer, - }), - }; - } - - public getContours(zoomLevel, options: any = {}) { - const { negative = false, timeout = 2000, nbLevels = 10 } = options; - - const max = Math.max( - Math.abs(this.minMax.maxZ), - Math.abs(this.minMax.minZ), - ); - - let _range = getRange( - this.median * 1 * Math.pow(2, zoomLevel), - max, - nbLevels, - 2, - ); - - if (negative) { - _range = _range.map((value) => -value); - } - const contours = this.conrec.drawContour({ - contourDrawer: 'basic', // shape or basic - levels: _range, - timeout, - }); - - return Object.freeze(contours); - } -} - -function getRange(min: number, max: number, length: number, exp?: number) { - if (exp !== undefined) { - const factors: number[] = []; - - factors[0] = 0; - - for (let i = 1; i <= length; i++) { - factors[i] = factors[i - 1] + (exp - 1) / Math.pow(exp, i); - } - - const lastFactor = factors[length]; - - const result = new Array(length); - - for (let i = 0; i < length; i++) { - result[i] = (max - min) * (1 - factors[i + 1] / lastFactor) + min; - } - - return result; - } else { - const step = (max - min) / (length - 1); - - return range(min, max + step / 2, step); - } -} - -function range(from: number, to: number, step: number) { - const result: number[] = []; - - for (let i = from; i < to; i += step) { - result.push(i); - } - - return result; -} diff --git a/src/data/data2d/Spectrum2D/contours.ts b/src/data/data2d/Spectrum2D/contours.ts index 083dc37b3..af7be8050 100644 --- a/src/data/data2d/Spectrum2D/contours.ts +++ b/src/data/data2d/Spectrum2D/contours.ts @@ -127,7 +127,7 @@ function getRange(min: number, max: number, length: number, exp?: number) { factors[0] = 0; for (let i = 1; i <= length; i++) { - factors[i] = factors[i - 1] + (exp - 1) / Math.pow(exp, i); + factors[i] = factors[i - 1] + (exp - 1) / exp ** i; } const lastFactor = factors[length]; @@ -201,7 +201,7 @@ function getContours(zoomLevel: number, options: ContoursCalcOptions) { const max = Math.max(Math.abs(data.maxZ), Math.abs(data.minZ)); - let _range = getRange(median * 1 * Math.pow(2, zoomLevel), max, nbLevels, 2); + let _range = getRange(median * 1 * 2 ** zoomLevel, max, nbLevels, 2); if (negative) { _range = _range.map((value) => -value); diff --git a/src/data/parseMeta/mapErrors.ts b/src/data/parseMeta/mapErrors.ts index 163cdf5f8..e97ed3599 100644 --- a/src/data/parseMeta/mapErrors.ts +++ b/src/data/parseMeta/mapErrors.ts @@ -3,7 +3,9 @@ import { ParseError } from 'papaparse'; export function mapErrors(errors: ParseError[]) { const result = {}; for (const error of errors) { - result[error.row] = error.message; + if (error?.row) { + result[error.row] = error.message; + } } return result; } diff --git a/test-e2e/NmriumPage.ts b/test-e2e/NmriumPage.ts index 627b46cdb..58f1c0f73 100644 --- a/test-e2e/NmriumPage.ts +++ b/test-e2e/NmriumPage.ts @@ -36,7 +36,7 @@ export default class NmriumPage { } public async clickTool(id: string) { - await this.page.click(`_react=ToolbarItem[id="${id}"]`); + await this.page.click(`_react=ToolbarItem[id="${id}"] >> nth=0`); } public async assertXScaleDomain(min: number, max: number) { diff --git a/test-e2e/panels/peaks.test.ts b/test-e2e/panels/peaks.test.ts index 6dfff1077..c506dce10 100644 --- a/test-e2e/panels/peaks.test.ts +++ b/test-e2e/panels/peaks.test.ts @@ -144,8 +144,11 @@ test('Processed spectra peaks', async ({ page }) => { ]; for (const [i, { p, intensity }] of peaksData.entries()) { const peak = peaks.nth(i); + // eslint-disable-next-line no-await-in-loop await expect(peak).toBeVisible(); + // eslint-disable-next-line no-await-in-loop await expect(peak).toContainText(p); + // eslint-disable-next-line no-await-in-loop await expect(peak).toContainText(intensity); } }); @@ -168,6 +171,7 @@ test('Check no negative peaks in processed spectra', async ({ page }) => { for (let i = 0; i < 16; i++) { const peak = peaks.nth(i); + // eslint-disable-next-line no-await-in-loop expect(await peak.locator('td >> nth=2').textContent()).not.toContain( '-', ); diff --git a/test-e2e/panels/ranges.test.ts b/test-e2e/panels/ranges.test.ts index 387cd4639..7d31e3013 100644 --- a/test-e2e/panels/ranges.test.ts +++ b/test-e2e/panels/ranges.test.ts @@ -127,12 +127,17 @@ test('Automatic ranges detection should work', async ({ page }) => { { s: '2.15', r: '0.07' }, { s: '2.31 - 2.34', r: '1.01' }, ]; + + const testPromises: Array> = []; for (const [i, { s, r }] of rangesData.entries()) { const range = ranges.nth(i); - await expect(range).toBeVisible(); - await expect(range).toContainText(s); - await expect(range).toContainText(r); + testPromises.push( + expect(range).toBeVisible(), + expect(range).toContainText(s), + expect(range).toContainText(r), + ); } + await Promise.all(testPromises); }); test('Multiplicity should be visible', async ({ page }) => { diff --git a/test-e2e/panels/spectra.test.ts b/test-e2e/panels/spectra.test.ts index a68682725..b3aac0a77 100644 --- a/test-e2e/panels/spectra.test.ts +++ b/test-e2e/panels/spectra.test.ts @@ -277,10 +277,7 @@ test('2d spectrum', async ({ page }) => { await test.step('Delete 1H tab', async () => { // Go to 1H tab await nmrium.page.click('_react=SpectrumsTabs >> _react=Tab[tabid="1H"]'); - // Delete 1H Spectrum item - await nmrium.page.click('_react=SpectraTable >> _react=ReactTableRow ', { - button: 'right', - }); + await nmrium.page.click('_react=Button[toolTip="Delete selected spectra"]'); //confirm delete the selected await nmrium.page.click('_react=ConfirmationDialog >> text=Yes'); @@ -368,8 +365,8 @@ test('Export source from 1H spectrum', async ({ page }) => { await nmrium.open1D(); }); await test.step('Open Save as window ', async () => { - await nmrium.page.click('_react=ToolbarMenu[toolTip="Export As"]'); - await nmrium.page.click('_react=MenuItem >> text=Save data as'); + await nmrium.clickTool('exportAs'); + await nmrium.page.click('_react=DropdownMenu >> text=Save data as'); }); await test.step('Check include data options', async () => { const fields = nmrium.page.locator('_react=ModalContent >> _react=Field'); @@ -407,8 +404,8 @@ test('Export source from 1H spectrum', async ({ page }) => { }); await test.step('Check export DATA SOURCE', async () => { const downloadPromise = nmrium.page.waitForEvent('download'); - await nmrium.page.click('_react=ToolbarMenu[toolTip="Export As"]'); - await nmrium.page.click('_react=MenuItem >> text=Save data as'); + await nmrium.clickTool('exportAs'); + await nmrium.page.click('_react=DropdownMenu >> text=Save data as'); await nmrium.page.click( '_react=ModalContent >> _react=Field[value="DATA_SOURCE"]', ); @@ -433,8 +430,8 @@ test('Export source from 1H spectrum', async ({ page }) => { }); await test.step('Check export NO Data', async () => { const downloadPromise = nmrium.page.waitForEvent('download'); - await nmrium.page.click('_react=ToolbarMenu[toolTip="Export As"]'); - await nmrium.page.click('_react=MenuItem >> text=Save data as'); + await nmrium.clickTool('exportAs'); + await nmrium.page.click('_react=DropdownMenu >> text=Save data as'); await nmrium.page.click( '_react=ModalContent >> _react=Field[value="NO_DATA"]', ); @@ -466,8 +463,8 @@ test('Export source from imported spectrum', async ({ page }) => { ); }); await test.step('Open Save as window ', async () => { - await nmrium.page.click('_react=ToolbarMenu[toolTip="Export As"]'); - await nmrium.page.click('_react=MenuItem >> text=Save data as'); + await nmrium.clickTool('exportAs'); + await nmrium.page.click('_react=DropdownMenu >> text=Save data as'); }); await test.step('Check include data options', async () => { const fields = nmrium.page.locator('_react=ModalContent >>_react=Field'); @@ -505,8 +502,8 @@ test('Export source from imported spectrum', async ({ page }) => { }); await test.step('Check export NO Data', async () => { const downloadPromise = nmrium.page.waitForEvent('download'); - await nmrium.page.click('_react=ToolbarMenu[toolTip="Export As"]'); - await nmrium.page.click('_react=MenuItem >> text=Save data as'); + await nmrium.clickTool('exportAs'); + await nmrium.page.click('_react=DropdownMenu >> text=Save data as'); await nmrium.page.click( '_react=ModalContent >> _react=Field[value="NO_DATA"]', ); @@ -540,15 +537,18 @@ test('Multiple spectra analysis', async ({ page }) => { await expect(nmrium.page.getByTestId('spectrum-line')).toHaveCount(13); }); await test.step('Check spectra names', async () => { + const testPremisses: Array> = []; for (let i = 0; i < 13; i++) { - await expect( + const test = expect( nmrium.page.locator( - `_react=SpectraTable >> _react=SpectrumName >> nth=${i} >> text=Coffee ${ + `_react=SpectraTable >> _react=SpectrumName >> text="coffee ${ i + 1 - }`, + }"`, ), ).toBeVisible(); + testPremisses.push(test); } + await Promise.all(testPremisses); }); await test.step('Check spectra colors', async () => { expect(await nmrium.getNumberOfDistinctColors()).toBe(13); diff --git a/test-e2e/panels/structures.test.ts b/test-e2e/panels/structures.test.ts index 5ab204b32..e50640684 100644 --- a/test-e2e/panels/structures.test.ts +++ b/test-e2e/panels/structures.test.ts @@ -305,7 +305,8 @@ test('molecules 1H spectrum', async ({ page, browserName }) => { await expect( nmrium.page.locator('_react=Modal >> text=New sum for H will be 12!'), ).toBeVisible(); - await nmrium.page.click('_react=Modal >> _react=ModalCloseButton'); + //TODO check why we have Button2 in development env and Button in production + await nmrium.page.click('dialog >> button:has(svg[data-icon="cross"])'); }); await test.step('Check molecules in ranges', async () => { await nmrium.clickPanel('Ranges'); @@ -335,7 +336,8 @@ test('molecules 1H spectrum', async ({ page, browserName }) => { await expect( nmrium.page.locator('_react=Modal >> text=New sum for H will be 12!'), ).toBeVisible(); - await nmrium.page.click('_react=Modal >> _react=ModalCloseButton'); + //TODO check why we have Button2 in development env and Button in production + await nmrium.page.click('dialog >> button:has(svg[data-icon="cross"])'); }); await test.step('Check float molecule', async () => { // Check float molecule btn is off.