From ae694065ea6a154f703841705857f3974c0a1fcf Mon Sep 17 00:00:00 2001 From: Corey Bradshaw Date: Mon, 9 Sep 2024 15:32:13 +0930 Subject: [PATCH] Add files via upload --- data/Matrix_corrected.nex | 108 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 108 insertions(+) create mode 100644 data/Matrix_corrected.nex diff --git a/data/Matrix_corrected.nex b/data/Matrix_corrected.nex new file mode 100644 index 0000000..f4670dc --- /dev/null +++ b/data/Matrix_corrected.nex @@ -0,0 +1,108 @@ +#NEXUS + + BEGIN DATA; + DIMENSIONS NTAX=82; NCHAR=268; + FORMAT SYMBOLS= " 0 1 2 3 4" GAP=- + + + MATRIX +'Alcoveria_brevis' 02110211000100210100012012110011100101101010010000101101011100010000011011000003011000010000110---10001---010020010111111101000011101111131100010110001101101100111110010101111111010001011010100111111111011102101011110000100101210110210111011101110200011110011010010100 +'Allenypterus_montanus' 01110111021110001100011002000010100100200000--0000002001011000010000001021000002011000000100100---00000012000012011-01110101011011000101011010000111000101101100111100011101010011000000000110010000110111001101101011110000100100-10110000100--0-01010121110010111010010010 +'Atacamaia_solitaria' 02110111000110000020012102110110110020200100--100101110001110101000001103100010310-000010000110---10001---010130010111111101000010101121111100010110101101101100110110010101010111000001011010100111111111011101101011110000100101210110211111011101110200011110011010010101 +'Axelia_robusta' 02110111000110000100012112010110100000200110---00101-101011101010000011031000103101000110000110---10001---010130010111111101000010101121111100010110101101101100110110010101010111000001011010100111111111011101101011110000100101210110211111011101110200011110011010010101 +'Axelrodichthys_araripensis' 02110--11--100200120012111000012100201211010---000101100111201-10000011011021102011001010000110---20001---011141110111--01120--01100122123110001010000111110110011111--10101111111010001011011100111111110011101101011110100100101111010211111011101010201011110021111110101 +'Axelrodichthys_lavocati' 02110--1101100200120011002110010100111101010---000111100111100-10000011011000102111001010000110011200010111111411101111101120--01100112113110001011000110110110011111--10101111111010001011010100111111111011102101010110100100101111110210111011101010200011110011011110101 +'Axelrodichthys_maiseyi' 02110--1101100200020012111010010100101011010---000101100101211-10000011011000102111001110000110011200010110111411101111101120--011001121131100010100001101101100111110010101111111010001011011100111111110011101101010110100100101111010211111011101010201011110021111110101 +'Axelrodichthys_megadromos' 02110--1101100120020012111010012100201001010---000101100111201-1000001101102000201100111000011001120001---0110101101111101120--011000121231100010100101101101100111110010101111111010001011011100111111110011101101010110100100101111010211111011101010201011110021111110101 +'Belemnocerca_prolata' 0111011101010000112001010210011010001011101001100011000001110000000000101101000201100000001001001110000012020011010111111101000011101101021010010110000101101100111110011101010011000000000110001101110111001101104011110100100101111111000111000001010201010110011010020001 +'Caridosuctor_populosum' 01110001021100001101000100100010100000201100--1000000001011100000000010011010002011000000100010---10000000010010010111--1101100011000201131000010110000101101100111110011101110011000000000010001101110111001101102011110000100101111111000111101001010201010110011110010001 +'Changxingia_aspratilis' 0211011100011000010001211211011010000020101001100000-00101110101000001101100010301100000000011001110001011010130010111111101000011101101111100010110001101101100111110010101011111000001011010100111111111011101103011110000100100-10110101111011101110200010110011011010101 +'Changxingia_weii' 0111010101010000110001010210001010000010100001100000-001011100000000010011010002011000000100010---10000011010010010111111101100011101101031000010110000101101100111110011101110011000000000010001101110111001101104011110000100101111110000111000001010201010110011010010001 +'Chaohuichthys_majiashanensis' 01111201000110010140011012101010100001101010011000001001011200010000011021000012101000000010110---10001---001140010111111101100011100301131100010110110101101100111110011101011011000001000010000101110111011101103011110010100101210010100111020-01110200010110011010010100 +'Chinlea_sorenseni' 11110--201010020112001211211001010010121101001100011-100111200000000011021021103011100010101110---20001---011140010111111101101111101101131110010110011101101100111110010101101111110001011011100111111111011111101000110000100101110110201111011001110200010110011011010101 +'Coccoderma_suevicum' 12111--21--1--0-1020012102100111100000201000--1000001000111101010000011111001002011000000001110---00001---010110010111111101000011101101111010000110000101101100110110011101011111000001000000000101110111011101104011110000101010-10110200111121101010200010110011010010100 +'Coelacanthus_granulatus' 01110--01--110100100011102100112100100200010---000000001011001010100011131100003111000000100110---10001---010130010111--1101000011101301131010010110000101101100111110011101110011000001000010000101110111101101100011110000100101210110200111100-00--0200010110011010010101 +'Diplocercides_heiligenstockiensis' 01110101000110001120011002000000100000201010---000000000001100000000101021010011011100010000110---10000211000011000001--0100011011000101011000000100000101000100111100011100010010000000000110010000100111001101101011110010100100110110000100000001010200011001020000010000 +'Diplocercides_kayseri' 01110101000110001120011002000000100000201001011000000100000100000000001021010011011100000000010---10000111010011000101--01000100110001010110000--10000010100010011110001111001001000000000-110010000100111001101101011110010100100110110000100000001010200010000011010010000 +'Diplurus_newarki' 01110--11--110001100011002110010100101211100-11001000001101100010000011021021003011100000100110---01001---010222010111--01010--011-013001311000--10000110110110011111--10101101111110001011011100111111111011101103011110010100101210110111111011101110200011110011011110100 +'Dobrogeria_aegyssensis' 11110012010100201120012112110110100111211010---0011101001112010000000110210211000111000101011100111000001101114001011111110110111110110113111001011001110110110011111--10101101111110001011011100111111111011111101001110000100101110110201111011001110200010110011011010101 +'Eoactinistia_foreyi' 0111010101011000110001110210001010000010100001100000000101110000000001101101000201100000010001001110000011010110000011--1101000011101101031000010110000101101100111100011101110011000000000010000101110111001101104011110000100101110110000100000001010200010110011010010000 +'Euporosteus_eifeliensis' 0111011101111000110001100200001110000020000001100000200101100101000000102101000201100000010000001110000011020121000001110101001011000101011100000111100101101100111100011101010010000000000110010000110111001101101011110200100100100110000111101001000210010110011010010000 +'Euporosteus_yunnanensis' 0111010101011000110001110210001110000010100001100000000101110000000001101102000201100000010001001100000011010110010111111101000011101101031010010110000101101100111100011101110011000000000010000101110111001101104011110000100101110110000100000001010200010110011010010000 +'Foreyia_maxkuhni' 0111120100011001014-01--12101110100001101-10---10----001011201010001-----2000011111000100010110---10-00012011142010111--11001--011101401131100010110110111101100111110011101011011000001100010000101110111011101100111110001100101210110110111020101110200010110011010010100 +'Garnbergia_ommata' 01110--1020100201120012112110110100101200010011000110100111200010000111021001101011100000101110---10001---021021010111111101101111101101131110010110011101101100111110010101101111110001011011100111111111011111101001110000100101110110201111010-01110200010110011011010101 +'Gavinia_syntrips' 02110011000010001000011002100000100010200001010000000101000000010000001001010002011000010000010---100002111000100000001101000110100001010111100001000001010000001110000111000100100110000001000000000000010011120010111110100001001101100001000000010100-1000001010010010000 +'Gogocoelacanthus_zhumini' 021100010000100-1000011002100000100010200001010000000101000000010000001001010002011000010011010---110002111000100001001101000110110001210111000--10000010100000011100001110001001001100000-10-000-00001001001112001011111010000100110110000100000001010001000001010010010000 +'Guizhoucoelacanthus_guanlingensis' 02110211000100110100012012110011100101101000--0000101100011100010000011011000003011000010000010---10001---000020010111111101000011101111131100010100001101101100111110010101111111010001011010100111111111011102101011-1-000100001210110001111021001110200010110021010010001 +'Hadronector_donbairdi' 01110111011110001100011002000010100000201000--1000002000011000010000101021010003011000000000000---10000012010121000001--0101001010000001001000000111101101101100111100011101010011000000000110010000110111001101101010010000100100-11110100111000-01010200010110011110010001 +'Hainbergia_granulata' 0111120100011001014001101210101010000110101001100000100101120100000000102200001111100010001011001110000012011120010111111101100011101101131100010110110111101100111110011101011011000001000010000101110111011101103011110000100101210110110111020-01110200010110011011010100 +'Heptanema_paradoxum' 01110011110110011100011002110010100101201100011001000001101101000000011021021103111100100100110---01001---0112320101111101010--011101301131100010100001101101100111110010101101111110001011011100111111111011101101011110000100101210110111111011101110200011110011010110101 +'Holophagus_gulo' 00110--11--100201120012112110011100111201010---000000100111100010000011011011002011100010101110---10000011011121010111111101100111100301131100010110011111101100111110010101101111110001011011100111111111011101101010110100110100-11110211111020-01011200011110011111010101 +'Holopterygius_nudus' 0211000100011000102001100200000010000020000001000000000000000001000000100101000101100001000001001110000211100010000000110100011011000101011000000100000101000000111000011100000010000000000100000000100011001101011010110000000100110110000100--0-01010121100001010000010010 +'Indocoelacanthus_robustus' 0111120100011001014001101210101010010110101001100000100101120001000000102100001210-000000010110---10001---001140010111111101100011100301131100010110110101101100111110011101011011000001000010000101110111011101103011110000100101111010100111020101110200010110011010010100 +'Latimeria_chalumnae' 021110101--110001100012112110112100001001100---00100011011100110001001103100101300-010001111110---21000011011211010111--110100011120140114110001011011111110110011111--1010111101111000101-011100111111111000001101010110000100101211110211111011101110200011110011110020100 +'Latimeria_menadoensis' 021110101--110001100012112110112100001001100---00100011011100110001001103100101300-010001111110---2100001101121101011111110100011120140114110001011011111110110011111--1010111101111000101-011100111111111000001101010110000100101211110211111011101110200011110011110020100 +'Laugia_groenlandica' 221101120001100-0100012112100110100010201010---000102001010101111--0011021011002011-000001011-0---10-01---010010010111--010100011110110111100000011000010110110011011--11101011111000001000000000101110111011101103011110000101010-11010200111121101010201010110011110010001 +'Libys_polypterus' 121100111--100101130012102110011100001211010---00100010011100111001001102102100000-000001101110---02001---011220010111111101000111201321111100010110011111101100111110010101111111010001011011100111111111100001101011110000110100-11010210111010-01111200011110011111010101 +'Lochmocercus_aciculodontus' 02110101020110011110011002000010100000100100-10000000001001100000000101001000103011000010100010---10000010010100000001110101001010001401031000010110001101101100111100011101110011000000000010000101110111101100101011010000100000-01011000100--0-01010200010010011010010000 +'Lualabaea_lerichei' 0211021110110020012001211100001210020121101001000010110011120101000001111102110201100111000011001120001011011141110111110112000011001221231100010100001111101100111110010101111111010001011011100111111110011101101011110100100101111010211111011101010201011110021111100101 +'Luopingcoelacanthus_eurylacrimalis' 02110--1001100200120011002110012100001211100010001011100101011110000011011001111111110000000110---20001---0010400101111101020--011101301121110010100001101101100111110010101111111010001011010100111111111110112101011110000100201210110211111021001110201011110011011010101 +'Macropoma_lewesiensis' 22111--2000110200120012112100110100001201010---000001111111101110010011021021002011010000101110---10001---011020010111--110300011110130113110001011101111110110011111--10101110011110001011011100111111111000111103011110000100100-10110211111111001010200011110011111020101 +'Macropoma_precursor' 22111--2000110200120012112110110100001201010---00001-111111101110010011021021002011010000101110---00001---011020010111--110300011120130113110001011101111110110011111--10101110011110001011011100111111111000111103011110000100100-10110211111111001010200011110021111020101 +'Macropoma_willemoesii' 12110011110100101130012102110011100001211010011001000100111001110010011021021000001000001101110---02001011011220010111111101000111201321111100010110011111101100111110010101111111010001011011100111111111100001101011110000100100-11110210111010001110200011110011111010101 +'Macropomoides_orientalis' 02110--11--100010120011002110111100001210000010000111100101001010000011111010002011010010000110---00001011011040010111111102000011201301121100010100001101101100111110010101111111010001011010100111111111111102102011110000100100-10110211111010-01011200011110021011120100 +'Mawsonia_brasiliensis' 01110--1101110110120011002110010100111201010---00011-100111100010000011021000102110001010000110---20001---0110401101111101120--011001121111100010100001101101100111110010101111111010001011010100111111111011102101010110100100101011111210111021101010200011110111011010101 +'Mawsonia_gigas' 02110--1101100100120011002110010100111211010---00011-10011110001000001101100010210-001010000110---20001011011241111-011101120--01100112113110001010000110110110011111--10101111111010001011010100111111111011102101010110100100101110110200111011101010200011110011011110101 +'Mawsonia_soba' 0111021110111011012001100211001010011120101001000011110011110001000001102100010211000101000011001120001011011040100111110112000011001121111100010100001101101100111110010101111111010001011010100111111111011102101010110100100101011111210111021101010200011110111011010101 +'Mawsonia_tegamensis' 02111--1001100110120011002110010100101201010---00011-100111100010000011021000102111001010000110---20001011011040110111110112000011001121131100010100001101101100111110010101111111010001011010100111111111011102101010110100100101110110210111011101010200011110011011110101 +'Megalocoelacanthus_dobiei' 12110--1010100101130012102110011100001201010011001000100111001110010011021021000001000001101110011020010110010110101111101010--11020132113110001011001111110110011111--10101111111010001011011100111111111100001101011110000100100211110210111010001110200011110011111010101 +'Miguashaia_bureaui' 021100010001100-1021100000000000100000000000--0000000000000000010000000001010000010000000000110---000000111001000000001101000000111000010010000001000001010000001110000111000000100000000001000000001000110011010100101101100001001101000000-0--0-00--00-10000010-0000011100 +'Miguashaia_grossi' 0211000100011000102110000000000010000000000001000000000000000001000000000101000001000000000011001100000011100120000000110100000011100001001000000100000101000000111000011100000010000000000100000000100011001101010010110210000100110100000000000000010001000001010000011100 +'Moenkopia_wellesi' 011101001001101001000111021001121001002000100110000000010110010101000111311000031110000001001100111000101101013001011111110100001110130113101001011000010110110011111--11101110011000001000010000101110110101101100011110000100101210110200111100100110200010110011010010101 +'Parnaibaia_maranhaoensis' 02110--0021110210120011001110012100001101000--000001-000101001010000011011021102111100000000110---20001---000030110111--0102000011101201121100010100000101101100111110010101111111010001011010100111111111110111101011110000100201210110211111021001110200010110011011110101 +'Piveteauia_madagascariensis' 01111201000110010140011012100010100001201010011000001001011201010000011021010002011000000010110---10001---0102410101111111010--011201101131100010110110101101100111110011101011011000001000010000101110111011101103001110000100001210110101111020-01110201010110011010010101 +'Polyosteorhynchus_simplex' 011101110211100111110010000000121000001000010-0000000001011000000000001011010003011000000100010---11000000000140000001110101001010001301031000010110001101101100111100011101110011000000000010000101110111101100101011110000100100-10111000100--0-01010200010110011110000000 +'Rebellatrix_divaricerca' 0111011101111000110001100200001110000020000001100000200101100101000000102101000201100000010000001110000011020121000001110101001011000101011100000111100101101100111100011101010010000000000110010000110111001101101011110200100100-00110000111101001000210010110011010010000 +'Reidus_hilli' 0111010100011011010001211211001011010010101001100000010101111000000001101100100201110000010011001101000012011011010111110101000011101101131110010110001101101100111110010101101111010001011011101111111111111100103011110000100101010110201111100101100200010110011010000101 +'Rhaboderma_elegans' 02110101000100000100010102100010100110101000--1000000000011100000000010011020002011000000110010---10000011010010000111--110010001110110101101001011010110110110011111--1010111011100000000-010001101110111001101104011110100100101111111000111000-01010200010110011010010001 +'Rhabdoderma_exiguum' 01110101010110001100011102100011100000101000011000000001011100000000011011020002011000000100010---00000011010110010111111101000011101101031010010110000101101100111100011101110011000000000010000101110111001101104011110000100101110110000100--0001010200010110011010010000 +'Rhabdoderma_newelli' 01110111011110001000011002000010100000100000011000002001011001010000011021010002011000000101000---10000011010221000001110100001011000101011000000111101101101100111100011101010011000000000110010000110111001101101011110000100101111110200111010-01010200010110011010010000 +'Sassenia_groenlandica' 01110111010100001120010102100110100010111010---00011-000011100000000001011010002011000000010010---100000120200110101111111010--01110110102101001011000010110110011111--11101010011000000000110001101110111001101104011110100100101111111000111000001010201010110011010020001 +'Sassenia_tuberculata' 02110111000110100100012112110010100101201010011000001101011100010000011011000103011000000000110---10001011010020010111111101000011101101131100010110001101101100111110010101111111010001011010100111111111011101101011110000100101210110211111011101110200011110011010010101 +'Serenichthys_kowiensis' 01110101000110011100011002000010100100201010011000000000001100000000011021000011011100000100110---30000011010011000001110101001011000001011000000110000101101100111100011101010011000000000110010000110111001101100011110000100100110110000000000001010200010010011010010000 +'Shoshonia_arctopteryx' 0111010100011000112001100200000010000020100001100000000000110000000000102101001101110001000001001110000211000011000001110100011011000101011000000100000101000100111100011100010010000000000110010000100111001101101011110010100100110110000100000001010200010001010010010000 +'Sinocoelacanthus_fengshanensis' 0111010010011010010001110210011210010020001001100000000101100101010001113110000311100000010011001110001011010130010111111101000011101301131010010110000101101100111110011101110011000001000010000101110110101101100011110000100101210110200111100100110200010110011010010101 +'Spermatodus_pustulosus' 01110101010100001020012102100110100010201010---000110100011100010000100011100002011000010000010---1000021101001101011111110110001110112102101001011000010110110011111--11101100011000000000110001101110111001101104011110100100101111111000111000001010201010110011010020001 +'Styloichthys_changae' 0110---1020010001021001000000001001000000001100000000100000000-100000000010100000100000100000110110011001110000000000011010000011120000000101020010110010100001110100111100000001-000000000000001-00100011001101010010-0--10000100110100000000000000010001000001010000011000 +'Swenzia_latimerae' 12111--2000110100020012102110111120001101000--100000111111110010001001100102100200-110001101110---10001011001020010111--1103001111201301131100010111011111101100111110010101110011110001011011100111111111000111103011110000100100210110211111110-01010200010110011010020101 +'Ticinepomis_peyeri' 02110--1001100110120012002111012100001200000010100111100101001010000011111010101010000110000110---00001---0212410101111111011--011101301131100010100001111101100111110010101111111010001011010100111111111111102102011110000100101210110211111010-01011200011110011010010100 +'Trachymetopon_liassicum' 02110--1101100100020012011010012100101011010---000101100111201010000011111000102111001110000110---2000101101112101011111011200001100132111110001010000110110110011111--10101111111010001011010100111111111011111101010110100100101111010210111011101010200010110011011010101 +'Undina_cirinensis' 01110--1021100021120011112110011100001001001011000000000111000010000011021020101011000000101110---10000011011121000111111101101110100201131100010110011111101100111110010101101111110001011011100111111111011101102011110000100100-11110210111010-01110200011110011011000101 +'Undina_penicillata' 01110--1021100021100012112110011100001001001011000000100111000010000011021021101011000000101110---10000011011121000111--110310111110030113110001011001111110110011111--10101101111110001011011100111111111011101101011110000100100-11110211111010-01110200011110011010010101 +'Whiteia_durabilis' 01110101000110110100012112110010110100101010-11000000101011110000000011011001002011100000100110---01000012011031010111--1102000011101101131100010110001101101100111110010101101111010001011011101111111111111100103011110000100101010110201111100101100200010110011010000101 +'Whiteia_lepta' 01110101000110100100012112110010110100201010-11000000101011110000000011011001103011100000100110---11000012011041010111--1101000011101101131100010110001101101100111110010101101111010001011011101111111111111100103011110000100101010110201111100-01100200010110011010010101 +'Whiteia_nielseni' 01110101020110220100012112110011100100201010---000000101011200000000011011001103111100000110010---11000111001131010111111101000011101101131100010110001101101100111110010101101111010001011011101111111111111100101011110000100101210110211111100101100200011110011010010101 +'Whiteia_oishoii' 011101010201102201000101121100111001002010100--000000101011200010000011011001103111000000110010---01001---011131010111111101000011101101121100010110001101101100111110010101101111010001011011101111111111111100101010110000100101210110211111100-01100200011110011010010101 +'Whiteia_uyenoteruyai' 01110101020110220100010112110011100100201010011000000101011200010000011011021103111000000110010---01000111011131010111111101000011101101121100010110001101101100111110010101101111010001011011101111111111111100101011110000100101210110210111100101100200011110011010010101 +'Whiteia_woodwardi' 01110101010100100100012112110010100100210100--1001001100011100000000011021001103011100000100010---11000111011031010111--110100001110110112110001011000110110110011111--10101101111010001011011101111111111111100101011110000100101210110211111100101100200011110011010010100 +'Wimania_sinuosa' 02110111000110000100012112110110100000210110011001011101011101010000011031000103111000000100110---10001011000130010111111101000010101101111100010110-0110110110011111--10101010111000001011010100111111111011101101011110000100101210110211111011101110200011110011010010101 +'Youngichthys_xinghuainsis' 01110111011110001100011002000010100000200000011000002000011001010000101021010003011000000000000---10000311010121000001110101001010000201001000000111101101101100111100011101010011000000000110010000110111001101101010010000100100111110100111000001010200010110011010010000 +'Yunnancoelacanthus_acrotuberculatus' 021102110111--110120010002110112100201101010---000111000011100010000111011010002011000010000110---20001---010020010111111101000011101111131100010100001101101100111110010101111111010001011010100111111111011102101011110010100101210110211111011001010200011110011010110101 + ; + END; + + BEGIN ASSUMPTIONS; + TYPESET * UNTITLED = ord: 1 - 2 6 8 10 15 - 16 23 26 36 53 60 74 76 97 100 110 112 135 137 208 218 224 227 240 258, unord: 3 - 5 7 9 11 - 14 17 - 22 24 - 25 27 - 35 37 - 52 54 - 59 61 - 73 75 77 - 96 98 - 99 101 - 109 111 113 - 134 136 138 - 207 209 - 217 219 - 223 225 - 226 228 - 239 241 - 257 259 - 268; + END; + BEGIN LABELS; + CHARGROUPLABEL Skull COLOR = (RGB 1 0.10196078 0.10196078) ; CHARGROUPLABEL Cheek COLOR = (RGB 1 0.62745098 0.06666667) ; CHARGROUPLABEL Opercular_series COLOR = (RGB 1 1 0.10196078) ; CHARGROUPLABEL Lower_jaw COLOR = (RGB 0.43921569 1 0.06666667) ; CHARGROUPLABEL Palate COLOR = (RGB 0.06666667 1 0.81176471) ; CHARGROUPLABEL Neurocranium COLOR = (RGB 0.10196078 0.45882353 1) ; CHARGROUPLABEL Hyoid_arch COLOR = (RGB 0.62745098 0.06666667 1) ; CHARGROUPLABEL Branchial_arches COLOR = (RGB 1 0.06666667 1) ; CHARGROUPLABEL Pectoral_fins_and_girdle COLOR = (RGB 1 0.83529412 0.83529412) ; CHARGROUPLABEL Pelvic_fins_and_girdle COLOR = (RGB 1 1 0.90196078) ; CHARGROUPLABEL Median_fins COLOR = (RGB 0.93333333 1 0.93333333) ; CHARGROUPLABEL Vertebral_column COLOR = (RGB 0.83529412 0.90196078 1) ; CHARGROUPLABEL Scales COLOR = (RGB 0.94117647 0.90196078 1) ; CHARGROUPLABEL Organs COLOR = (RGB 1 1 1) ; +END; +BEGIN MESQUITE; + MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1557109821625; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4130245647425456845; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7387068455525395000; tell It; setDefaultOrder 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258; attachments ; endTell; mqVersion 351; checksumv 0 3 2815271448 null getNumChars 259 numChars 259 getNumTaxa 75 numTaxa 75 short true bits 7 states 7 sumSquaresStatesOnly 66.0 sumSquares 66.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 67; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1540 789; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxasList #mesquite.lists.TaxablockList.TaxablockList; tell It; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxablockListNumber.TaxablockListNumber; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1473 717; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; showTaxa #4130245647425456845 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4130245647425456845; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 200; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1473 717; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7387068455525395000 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 153; endTell; setExplanationSize 70; setAnnotationSize 80; setFontIncAnnot 0; setFontIncExp 0; setSize 1473 617; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByCharValue.ColorByCharValue; tell It; setNumberTask #mesquite.charMatrices.PercentMissing.PercentMissing; setWindowWidth 1; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames off; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; getInfoPanel; tell It; btspOpen true; apOpen true; fpOpen true; endTell; toggleInfoPanel on; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #7387068455525395000 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.parsimony.CharListParsModels.CharListParsModels; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1473 717; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; +END; +BEGIN MESQUITECHARMODELS; + ProbModelSet * UNTITLED = 'Mk1 (est.)': 1- 259; +END; +BEGIN SETS; + CHARPARTITION * UNTITLED = Skull : 1- 54, Cheek : 55- 97, Opercular_series : 98- 103, Lower_jaw : 104- 134, Palate : 135- 146, Neurocranium : 147- 195, Hyoid_arch : 196- 202, Branchial_arches : 203- 207, Pectoral_fins_and_girdle : 208- 218, Pelvic_fins_and_girdle : 219- 222, Median_fins : 223- 246, Vertebral_column : 247- 252, Scales : 253- 258, Organs : 259; +END;