From 101c9334c848aa7bee7219a64d2cb3ce7fb833d7 Mon Sep 17 00:00:00 2001 From: Pratas Date: Mon, 2 Dec 2019 19:52:16 +0000 Subject: [PATCH] small fix --- profiles/JARVIS_profiles.sh | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/profiles/JARVIS_profiles.sh b/profiles/JARVIS_profiles.sh index 0356ed4..4a8f8a9 100755 --- a/profiles/JARVIS_profiles.sh +++ b/profiles/JARVIS_profiles.sh @@ -9,13 +9,15 @@ # | | # | FILE NEEDED TO THE COMPUTATION: | # | | -# | $1 > FILE WITH THE GENOMES ID | +# | $1: FILE WITH THE GENOME IN FASTA | # | | # ============================================================================== # # ============================================================================== # ================================ DEFINITIONS ================================= # +LEVEL="5"; +# GET_GTO=0; GET_JARVIS=1; RUN_COMPARISON=1; @@ -50,8 +52,8 @@ if [[ "$RUN_COMPARISON" -eq "1" ]]; WINDOW_SIZE=`echo "$LENGTH / 285" | bc`; echo "WINDOW SIZE: $WINDOW_SIZE"; # - ./JARVIS -v -l 5 -e SEQ - ./JARVIS -v -l 5 -e SEQ_R + ./JARVIS -v -l $LEVEL -e SEQ + ./JARVIS -v -l $LEVEL -e SEQ_R # gto_upper_bound -u 2 < SEQ.iae > SEQ_UB gto_upper_bound -u 2 < SEQ_R.iae > SEQ_R_UB