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MD5
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b70f1f387fdea2ef77f60347505334d6 *ChangeLog
28fa09d7909fa2c2ab97e0608e237632 *DESCRIPTION
6bddbc729b9be16787ee914ccd759977 *NAMESPACE
20e054497eb8e67d78b069a388a637b3 *R/OutbreakTools.R
0d0f710713447c3c4e7e922b95ced49d *R/annotatedTreeReader.R
d606c1301a254c19d5302347a0b02686 *R/auxClasses.R
764015498b8e7e51d4c1735d5797ca2d *R/dna2uniqSequences.R
84d17dfe35a04861c5bead6c380c1b9f *R/generics.R
b355f57fcc829d01c7f1cb9fa9e42363 *R/get.incidence.R
ddfb87817531076e5b18f2de494d34e5 *R/importFromJSON.R
26ca02862f80f365ac77d7f18ab9c1dd *R/make.attributes.R
0eda1b77762e80a4cd783c1fb37069ba *R/make.phylo.R
5e01de0f3951e49cd2d011f625cbfb3f *R/obkContacts.R
7a5886de8d9fc1fe4bada249da67a5c4 *R/obkData.R
1a326c0a1098b670eaeba6e19ef0beac *R/obkData_Accessors.R
c2fde272074d8a47a7ebfb045541ab61 *R/obkData_basics.R
a34cf3651144fdee12996b97359f794b *R/obkSequences.R
03c4967464a40a3f26149ac6bae97c99 *R/phylo2ggphy.R
c2c89c1322a546c250565154a825c21b *R/plot.R
00d4b187739837fe79271211b3289564 *R/plotGeo.R
887f1e91475818f7abb888a28ad3de67 *R/plotIndividualTimeline.R
ec8e1ceb672fe65fb05019ab741b7ad4 *R/plotggMST.R
ca267b0c1a99a410d0248c384180d66e *R/plotggphy.R
0987689445f8162e9c2da03433a81c4e *R/simuEpi.R
a891901f9fdf7c592cf900529f93bfb8 *R/subset.R
49bba3246fcdd5c48770804ad6d0f3c9 *R/uniqSequences.R
c2689f59d39bd81e3028fa3e8eed72ae *R/utils.R
37bdba9a704a2a525f8764e6a4fccdeb *R/zzz.R
1d7421f080a01b4a3c217fda5d1a8597 *build/vignette.rds
e6d0d4dba805eb33d8290b7e6a2588ad *data/FluH1N1pdm2009.RData
f82f7e16636ad49619bc87ad5cc3863f *data/HorseFlu.RData
e2f320c56ccbbb1833c6591afa4d692e *data/HorseFluRaw.RData
7bcd7154850154bbc2a3264ebea4efb1 *data/ToyOutbreak.RData
e551acfb10b89b1eb9ff6e71231241a8 *data/ToyOutbreakRaw.RData
f673dd7df2ff104d73eec7e3ff1dba28 *inst/doc/OutbreakTools.R
cc7e955fa185548e01c421549f74510f *inst/doc/OutbreakTools.Rnw
40e7793831e691dfd35d95475e37b787 *inst/doc/OutbreakTools.pdf
1470607bdf124ecb2a9737e6eff07ca8 *inst/files/BEAST-expl.nex
b063b117a96958e3f96c72724609eca2 *man/FluH1N1pdm2009.Rd
657b5b2a94feea3299516e0c1d9b5f77 *man/HorseFlu.Rd
a294a52f8e31d68c5ebf1b7ec65e42e9 *man/HorseFluRaw.Rd
16fd96c35654dabd49c5113d3378d500 *man/OutbreakTools.package.Rd
66e3f7ab10f405cbae61aa449b5b9943 *man/ToyOutbreak.Rd
dfc4f75d9dee707cc5235863c7157d45 *man/ToyOutbreakRaw.Rd
41c11d9b4950c56d136a17cd18e72f2e *man/annotatedTreeReader.Rd
125ff8019480c150de866dc13ae6fd1e *man/auxClasses.Rd
f220b3a67172fc7d278a1321ad000ca6 *man/dna2uniqSequences.Rd
8e090c17fdd2fd7d1b0065fe6a786b65 *man/get.data.Rd
1f35bfec8d991e15780f7b92ffdd5160 *man/get.dates.Rd
ca62edbf5244a771d68a9ef3d87ded2b *man/get.incidence.Rd
aa800c2322be67d08fc307acc8c23d92 *man/get.individuals.Rd
d150713754c80e9a56afeec9b5c52880 *man/importFromJSON.Rd
3373beda0892ae4e5883d1d2e33885a0 *man/make.attributes.Rd
6b2d913154904e264b8d5f1687739587 *man/make.phylo.Rd
2266142423c70ebd5952e4fc47d3595a *man/obkContacts.Rd
63b39f3c3d0da9a80899fc3dfa65e20c *man/obkData.Rd
0ee29a61d4219efa85da9da60028cfa3 *man/obkDataPlot.Rd
da7e4eb5c98f68d3464a98c4a905c712 *man/obkSequences.Rd
01caee3e5b631405ad752a7f89ef5dd0 *man/phylo2ggphy.Rd
2ab93d85684ddc463415391997840d87 *man/phylofromtranstree.Rd
d7ed6790669aef897a2b43f3f9360e38 *man/plotEpi.Rd
80a30aa2a34501c25675cbfbea2de66b *man/plotGeo.Rd
b23317e3f1a74f62f2810032985ca475 *man/plotIndividualTimeline.Rd
ebdd01419d6c9fe1a8330319f27a0133 *man/plotggMST.Rd
f70e0afc92b04f23eb87c72796e4be52 *man/plotggphy.Rd
a01be53e77d67ecf41a82189a8ea44ef *man/simuEpi.Rd
7dd0765a52cea6e1cb64c152afa079d0 *man/subset.Rd
2351185c150a7c2705a69705877ce8ff *man/uniqSequences.Rd
cc7e955fa185548e01c421549f74510f *vignettes/OutbreakTools.Rnw