metadata_template_CP02PMCO.txt

% Any of the 4 combinations of McLane unpacker v3.12 settings:
%       [ (space|comma delimited) & (headers|noheaders) ]
%   can be used to unpack profiler data. If headers are enabled
%   (recommended), the beginning and ending text rows for each
%   profile are written to text fields in the array of structures
%   containing the processed data.
%
% Rows starting with % are ignored and can be used as comments
%   to insert supplemental information concerning the deployment
%   or processing.
%
% Rows specifying metadata values needed for processing should
%   be of the form: variablename=value. spaces can be freely
%   used for readability.
%
% Null text entry value is '' (two single quotes).
% Null numerical entry is 0 with one exception (profiles_to_process)


% PROFILER TYPE
%   OOI profilers can be either 'coastal' or 'global'

profiler_type = 'coastal'


% DEPLOYMENT ID:
%   this must be a character vector enclosed by single quotes;
%   it will be prepended to the name of the matfile saved by
%   the processing code, which is 'MMP__yyyymmdd_HHMMSS' where
%   yyyymmdd_HHMMSS denotes the processing date and time. if
%   no deployment ID is desired, use ''.

deployment_ID = 'WFP_'


% GPS
%   required by TEOS-10 to calculate potential temperature and density
%   latitude: decimal degrees N (southern hemisphere values are negative)
%   longitude: decimal degrees E (west of Greenwich values are negative)

latitude  =   99.99999 
longitude = -999.99999    


% FOLDERS

unpacked_data_folder = Z:\unpacked
calibration_folder   = Z:\cals


% CALFILENAMES
%   OOI-style comma,separated,variable text files
%   must be located in calibration_folder.
%   if instrument not deployed use ''

fluorometer_calfilename  = CGINS-FLORTK-99999__19000101.csv
oxygen_calfilename       = CGINS-DOFSTK-99999__19000101.csv
par_calfilename          = CGINS-PARADK-99999__19000101.csv


% PROFILES
%   the first mclane profile, numbered at 0, is not processed
%   and is not to be included in the number_of_profiles value.
%
% the value entered should be the highest numbered profile,
% or, the highest numbered good profile, if desired.

number_of_profiles = 9999

%   the profiles_to_process entry can either be:
%     (a) [], in which case profile numbers 1 to the
%         number_of_profiles value are processed.
%     (b) a scalar or matlab-compatible row vector.

profiles_to_process = []


% BINNING PARAMETERS
%   format can either be a 3 element row vector or a scalar;
%   units are db.
%
%   (a) [minimum_bin_value   bin_size   maximum_bin_value]
%   (b) bin_size
%
%    if only bin_size is given the extrema will be
%    determined from the entire deployment's minimum
%    and maximum pressure values.

%ctd_binning_parameters = 0.5
%eng_binning_parameters = 1
%acm_binning_parameters = 2
ctd_binning_parameters = [25 0.5 125]
eng_binning_parameters = [25 1.0 125]
acm_binning_parameters = [25 2.0 125]


% PROFILE QUALITY DISCRIMINATORS
%   void_short_profile.m calling arguments:
%     do not process profiles that do not exceed a Minimum
%     number of points nptsMin or do not exceed a Minimum
%     range of values rangeMin.
%
%     on import ctd data do not have timestamps.
%     on import acm data do not have a pressure record.
%
%     to disable a discriminator enter a negative value.

ctd_pressure_nptsMin     = 30
ctd_pressure_rangeMin_db = 10
eng_pressure_nptsMin     = 10
eng_pressure_rangeMin_db = 10
acm_nptsMin              = 50

%   engineering profile mask:
%     backtrack sections are signified by values of 0 in the
%     engineering pressure record. sometimes there are small
%     negative and small positive values instead. set an
%     engineering pressure minimum so that smaller values are
%     flagged as bad data in the profile mask. to disable this
%     feature enter a large negative value (-99).
%   ctd profile mask:
%     flag a data point as bad when any profiler speed value
%     within a centered window dips below the minimum speed
%     setting. to disable this feature set the speed to a
%     large negative number (-99).

eng_pressure_valueMin_db  = 10
ctd_speedWindow_npts      =   7
ctd_speedMin_db_per_sec   =  0.02


% SENSOR FILTER TIME CONSTANTS
%   ctd acquisition rate is also calculated for each
%   profile; possibly it could be used for quality
%   control by comparing it to the nominal value
%   to be entered below (used for filtering and
%   shifting operations).
%
%   time constants of 0 result in no smoothing.

ctd_acquisition_rate_Hz               = 1.0
conductivity_filter_time_constant_sec = 0.5
oxygen_filter_time_constant_sec       = 0.5
pressure_filter_time_constant_sec     = 0.5
temperature_filter_time_constant_sec  = 0.5


% DATA SHIFTS
%   positive values shift variables to later time.
%
%   as per Seabird processing guidelines for SBE52 CTDs,
%   there is no provision to shift the temperature record.

conductivity_shift_sec = 0.5
oxygen_shift_sec       = -4
pressure_shift_sec     = -1.0


% THERMAL MASS COEFFS
%   Dave Murphy, SBE: At 1 Hz it may not be worth applying
%   a thermal mass correction (personal communication).
%
%   to disable thermal mass correction set inverseBeta to 0.

thermal_mass_alpha        = 0.03
thermal_mass_inverse_beta = 7.0


% BACKTRACK FLAGGING
%   codes:
%   (1) flag entire profile as bad (recommended until data are examined)
%   (2) flag data good from 1st non-zero pressure up to about 1
%       minute before 1st backtrack signalled, then bad afterwards
%   (3) flag as bad only pressure=0 sections.

backtrack_processing_flag = 2


% SENSOR DEPTH OFFSETS
%   for pressure binning non-ctd sensors:
%     there are 2 sizes of mclane profiler body, the original
%     and the longer, newer one to accommodate a battery refit.
%   All Pioneer (CP) deployments all use the shorter body.
%
%   negative values denote that the sensor in question is
%     located closer to the surface than the pressure sensor.
%     the measured distance offsets (meters) follow:
%
%       older shorter body;
%     aquadoppII  :  -0.34;
%     fluorometer :  -0.22;
%     par         :  -0.84;

currentmeter_depth_offset_m = -0.34
fluorometer_depth_offset_m  = -0.22
par_depth_offset_m          = -0.84


% CURRENT METER: AD2CP
%   magnetic declination [degrees] is positive when magnetic
%   north is east of geographic north.
%
%   ambiguity velocity [m/s] is used to correct raw beam
%   intensities for phase ambiguity.
%     1.0714 m/s is the AD2CP value as specified by Nortek.
%     (full wrap, ie [-pi pi]).
%   The recommended default action is to correct the velBeam
%   data for phase ambiguity.
%
%   wag radius [m] can be used to correct horizontal (Y) velocity:
%     0.43m is the geometric calculated value for AD2CP on WFP.
%   Wag signal is always calculated and included as a data product.
%   Whether it is used to correct velY is determined by the value
%   of correct_velY_for_wag. It is likely that a higher empirically
%   derived effective radius should be used.
%
%   correct velocities for pitch and roll:
%     a value of 0 results in no correction.
%     a value of 1 enables correction.
%   Recommended default action is to NOT correct because pitch
%   and roll values are typically small.
%
%   correct upwards velocity for profiler motion (dP/dt):
%     a value of 0 results in no correction.
%     a value of 1 enables correction.
%   It is observed that sometimes there are time and shape shifts
%   between the velU and dP/dt signals. The dP/dt signal is
%   calculated and included as a data product for comparison
%   regardless of the switch setting.

magnetic_declination_deg            = -14.1
ambiguity_velocity_m_per_sec        = 1.0714
wag_radius_m                        = 0.43
correct_velBeam_for_phase_ambiguity = 1
correct_velY_for_wag                = 0
correct_velXYZ_for_pitch_and_roll   = 0
correct_velU_for_dpdt               = 0