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Memory issue #3

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drkthomp opened this issue Oct 11, 2020 · 1 comment
Open

Memory issue #3

drkthomp opened this issue Oct 11, 2020 · 1 comment
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bug Something isn't working initialrun without only rna

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@drkthomp
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As per error 202010101748 Insufficient Resources

The job prepare_samples is requesting 42949672960 bytes of disk, more than the maximum of 7397748736 bytes of disk that SingleMachineBatchSystem was configured with. Scale is set to 1.

Quick fix was removing this check by commenting out the mem portion of checkResourceRequest in abstractBatchSystem.py in the venv. This is not sustainable.
@drkthomp
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Hopefully just fixed by reducing memory allocated in commit 2bebd75 , not yet tested. Other more pressing concerns

@drkthomp drkthomp added bug Something isn't working initialrun without only rna labels Oct 11, 2020
@drkthomp drkthomp self-assigned this Oct 11, 2020
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