diff --git a/README.md b/README.md index c24ea7a6..06b88572 100644 --- a/README.md +++ b/README.md @@ -8,7 +8,7 @@ [![shield_pypi_downloads](https://img.shields.io/pypi/dm/aucmedi?style=flat-square)](https://pypistats.org/packages/aucmedi) [![shield_license](https://img.shields.io/github/license/frankkramer-lab/aucmedi?style=flat-square)](https://www.gnu.org/licenses/gpl-3.0.en.html) -The open-source software AUCMEDI allows fast setup of medical image classification pipelines with state-of-the-art methods via an intuitive, high-level Python API or via an AutoML deployment through Docker/CLI . +The open-source software AUCMEDI allows fast setup of medical image classification pipelines with state-of-the-art methods via an intuitive, high-level Python API or via an AutoML deployment through Docker/CLI. ## Work in Progress! diff --git a/aucmedi/ensemble/augmenting.py b/aucmedi/ensemble/augmenting.py index f50f3442..bda7de60 100644 --- a/aucmedi/ensemble/augmenting.py +++ b/aucmedi/ensemble/augmenting.py @@ -103,6 +103,7 @@ def predict_augmenting(model, prediction_generator, n_cycles=10, aggregate="mean aug_gen = DataGenerator(samples_aug, path_imagedir=prediction_generator.path_imagedir, labels=None, + metadata=prediction_generator.metadata, batch_size=prediction_generator.batch_size, data_aug=data_aug, seed=prediction_generator.seed, diff --git a/docs/README.PyPI.md b/docs/README.PyPI.md index 113f51cc..691d3f92 100644 --- a/docs/README.PyPI.md +++ b/docs/README.PyPI.md @@ -8,7 +8,7 @@ [![shield_pypi_downloads](https://img.shields.io/pypi/dm/aucmedi?style=flat-square)](https://pypistats.org/packages/aucmedi) [![shield_license](https://img.shields.io/github/license/frankkramer-lab/aucmedi?style=flat-square)](https://www.gnu.org/licenses/gpl-3.0.en.html) -The open-source software AUCMEDI allows fast setup of medical image classification pipelines with state-of-the-art methods via an intuitive, high-level Python API or via an AutoML deployment through Docker/CLI . +The open-source software AUCMEDI allows fast setup of medical image classification pipelines with state-of-the-art methods via an intuitive, high-level Python API or via an AutoML deployment through Docker/CLI. ## Resources - Website: [AUCMEDI Website - Home](https://frankkramer-lab.github.io/aucmedi/) diff --git a/setup.py b/setup.py index 1efc4459..b3c48761 100644 --- a/setup.py +++ b/setup.py @@ -7,7 +7,7 @@ setup( name='aucmedi', - version='0.5.1', + version='0.5.2', description='AUCMEDI - a framework for Automated Classification of Medical Images', author='Dominik Müller', author_email='dominik.mueller@informatik.uni-augsburg.de',