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Fail of the Ubuntu setup due to testthat failing with segfault ☹️ #128

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j-i-l opened this issue Jul 12, 2024 · 3 comments · May be fixed by #134
Open

Fail of the Ubuntu setup due to testthat failing with segfault ☹️ #128

j-i-l opened this issue Jul 12, 2024 · 3 comments · May be fixed by #134
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@j-i-l
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j-i-l commented Jul 12, 2024

The fail of the Ubuntu setup is due to testthat failing in some test with segfault ☹️ https://github.com/furrer-lab/abn/actions/runs/9910471997/job/27380922315#step:18:80 which is not directly related to the installation process, but should be addressed anyways.

Originally posted by @j-i-l in #126 (comment)
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j-i-l commented Jul 13, 2024

See also https://github.com/furrer-lab/abn/actions/runs/9914355193/job/27393273145#step:17:266 ff

@matteodelucchi matteodelucchi linked a pull request Jul 18, 2024 that will close this issue
segfault on ubuntu #134
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@matteodelucchi matteodelucchi linked a pull request Jul 18, 2024 that will close this issue
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Seems like ${CPPFLAGS}, ${PKG_CPPFLAGS} and ${PKG_LIBS} did not end up correctly in the configure file (see here: https://github.com/furrer-lab/abn/actions/runs/9910471997/job/27380922315#step:13:80). Maybe this has something to do with the above errors...

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j-i-l commented Aug 7, 2024 •
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As far as I can tell the error occurs in forLoopContent and failing is the lme4::glmer call. (glmer is also mentioned in #62)

@matteodelucchi matteodelucchi self-assigned this Aug 23, 2024
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segfault on ubuntu furrer-lab/abn
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