diff --git a/workflows/transcriptomics/rnaseq-sr/CHANGELOG.md b/workflows/transcriptomics/rnaseq-sr/CHANGELOG.md
index 20acc310a..312efe98a 100644
--- a/workflows/transcriptomics/rnaseq-sr/CHANGELOG.md
+++ b/workflows/transcriptomics/rnaseq-sr/CHANGELOG.md
@@ -1,5 +1,11 @@
 # Changelog
 
+## [1.2] 2025-01-27
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.6+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.8+galaxy0`
+- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0`
+
 ## [1.1] 2024-11-25
 
 ### Automatic update
diff --git a/workflows/transcriptomics/rnaseq-sr/rnaseq-sr.ga b/workflows/transcriptomics/rnaseq-sr/rnaseq-sr.ga
index ffc320d6c..0dbf4a4c6 100644
--- a/workflows/transcriptomics/rnaseq-sr/rnaseq-sr.ga
+++ b/workflows/transcriptomics/rnaseq-sr/rnaseq-sr.ga
@@ -79,7 +79,7 @@
     ],
     "format-version": "0.1",
     "license": "MIT",
-    "release": "1.1",
+    "release": "1.2",
     "name": "RNA-seq for Single-read fastqs",
     "report": {
         "markdown": "\n# Workflow Execution Report\n\n## Workflow Inputs\n```galaxy\ninvocation_inputs()\n```\n\n## Workflow Outputs\n```galaxy\ninvocation_outputs()\n```\n\n## Workflow\n```galaxy\nworkflow_display()\n```\n"
@@ -781,7 +781,7 @@
             },
             "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.11a+galaxy1",
             "tool_shed_repository": {
-                "changeset_revision": "4014de1b6daf",
+                "changeset_revision": "53255f6eecfc",
                 "name": "rgrnastar",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
@@ -1144,7 +1144,7 @@
                     }
                 },
                 "tags": [],
-                "uuid": "71d32e61-70bd-4571-b3a4-79cc4d726233"
+                "uuid": "025c5a41-6e1e-4480-8165-c01f8c828a9f"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -1731,7 +1731,7 @@
                     }
                 },
                 "tags": [],
-                "uuid": "5626e8b4-2709-4f0f-9dd9-bc05f8b35222"
+                "uuid": "8e66ff06-6d90-4091-a7bc-801711c5b59b"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -1747,7 +1747,7 @@
         },
         "19": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.6+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.8+galaxy0",
             "errors": null,
             "id": 19,
             "input_connections": {
@@ -1802,15 +1802,15 @@
                     "output_name": "output_summary"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.6+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.8+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "1b851f87fbe0",
+                "changeset_revision": "5dbff3a5845a",
                 "name": "featurecounts",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
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-            "tool_version": "2.0.6+galaxy0",
+            "tool_version": "2.0.8+galaxy0",
             "type": "tool",
             "uuid": "5a03b546-eb3f-4e99-b845-24c8f54ed183",
             "when": "$(inputs.when)",
@@ -2512,7 +2512,7 @@
                     }
                 },
                 "tags": [],
-                "uuid": "aead7b4c-1b24-43d4-a44d-fc51b143e669"
+                "uuid": "e58ded35-46a9-4fdd-8524-cfda6b2e7c39"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -2528,7 +2528,7 @@
         },
         "23": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0",
             "errors": null,
             "id": 23,
             "input_connections": {
@@ -2571,15 +2571,15 @@
                 "top": 32.99591513431855
             },
             "post_job_actions": {},
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "f7e2f1eb3a16",
+                "changeset_revision": "a7e081ceb76a",
                 "name": "multiqc",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"fastp\", \"__current_case__\": 7, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"software_cond\": {\"software\": \"star\", \"__current_case__\": 28, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"log\", \"__current_case__\": 0, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"genecounts\", \"__current_case__\": 1, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}, {\"__index__\": 2, \"software_cond\": {\"software\": \"featureCounts\", \"__current_case__\": 9, \"input\": {\"__class__\": \"ConnectedValue\"}}}], \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "1.24.1+galaxy0",
+            "tool_version": "1.27+galaxy0",
             "type": "tool",
             "uuid": "e5335a24-fec9-422c-b93c-c172ad7e1b8c",
             "when": "$(inputs.when)",
@@ -3230,7 +3230,7 @@
                     },
                     "14": {
                         "annotation": "",
-                        "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0",
+                        "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0",
                         "errors": null,
                         "id": 14,
                         "input_connections": {
@@ -3304,15 +3304,15 @@
                                 "output_name": "stats"
                             }
                         },
-                        "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0",
+                        "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0",
                         "tool_shed_repository": {
-                            "changeset_revision": "f7e2f1eb3a16",
+                            "changeset_revision": "a7e081ceb76a",
                             "name": "multiqc",
                             "owner": "iuc",
                             "tool_shed": "toolshed.g2.bx.psu.edu"
                         },
                         "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"fastqc\", \"__current_case__\": 8, \"output\": [{\"__index__\": 0, \"type\": \"data\", \"input\": {\"__class__\": \"ConnectedValue\"}}]}}, {\"__index__\": 1, \"software_cond\": {\"software\": \"fastp\", \"__current_case__\": 7, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"software_cond\": {\"software\": \"star\", \"__current_case__\": 28, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"log\", \"__current_case__\": 0, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"genecounts\", \"__current_case__\": 1, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}, {\"__index__\": 3, \"software_cond\": {\"software\": \"featureCounts\", \"__current_case__\": 9, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"software_cond\": {\"software\": \"rseqc\", \"__current_case__\": 22, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"read_distribution\", \"__current_case__\": 6, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"gene_body_coverage\", \"__current_case__\": 1, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}, {\"__index__\": 5, \"software_cond\": {\"software\": \"samtools\", \"__current_case__\": 24, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"idxstats\", \"__current_case__\": 2, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}, {\"__index__\": 6, \"software_cond\": {\"software\": \"picard\", \"__current_case__\": 17, \"output\": [{\"__index__\": 0, \"type\": \"markdups\", \"input\": {\"__class__\": \"ConnectedValue\"}}]}}], \"title\": \"Combined Quality Report \", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-                        "tool_version": "1.24.1+galaxy0",
+                        "tool_version": "1.27+galaxy0",
                         "type": "tool",
                         "uuid": "b5e9c0d2-62f4-41b2-a1c7-5677d8555fd4",
                         "when": null,
@@ -3331,7 +3331,7 @@
                     }
                 },
                 "tags": [],
-                "uuid": "4a006f05-4ee3-4bbe-ab82-7d9489c378c0"
+                "uuid": "81396b8d-2758-4979-94b2-66c34bf47d67"
             },
             "tool_id": null,
             "type": "subworkflow",