Fail to build open3d_colcon #5

kungfrank · 2023-12-15T23:57:46Z

kungfrank
Dec 15, 2023

Hi,

Thank you for releasing this amazing repo. But when I followed the instructions and tried to build the project, I encountered this error:

(.venv) pckung@minnow:~/gira3d-reconstruction$ ./build
Detected Linux environment. Building.
Starting >>> eigen_colcon
[0.597s] WARNING:colcon.colcon_core.prefix_path.colcon:The path '/home/pckung/gira3d-reconstruction/wet/install' in the environment variable COLCON_PREFIX_PATH doesn't exist
[0.597s] WARNING:colcon.colcon_ros.prefix_path.catkin:The path '/home/pckung/gira3d-reconstruction/dry/install/pybind11_colcon' in the environment variable CMAKE_PREFIX_PATH doesn't exist
[0.597s] WARNING:colcon.colcon_ros.prefix_path.catkin:The path '/home/pckung/gira3d-reconstruction/dry/install/nanoflann_colcon' in the environment variable CMAKE_PREFIX_PATH doesn't exist
[0.597s] WARNING:colcon.colcon_ros.prefix_path.catkin:The path '/home/pckung/gira3d-reconstruction/dry/install/eigen_colcon' in the environment variable CMAKE_PREFIX_PATH doesn't exist
Starting >>> pybind11_colcon
Starting >>> nanoflann_colcon
--- stderr: eigen_colcon                                                                                
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 2.8.12 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_COMPILE_COMMANDS


Cloning into 'eigen_src'...
HEAD is now at 3147391d9 Change version to 3.4.0.
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
---
Finished <<< eigen_colcon [9.00s]
--- stderr: nanoflann_colcon                                                                              
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 2.8.12 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_COMPILE_COMMANDS


Cloning into 'nanoflann_src'...
HEAD is now at 05af582 Release v1.4.1
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
---
Finished <<< nanoflann_colcon [13.6s]
[Processing: pybind11_colcon]                             
[Processing: pybind11_colcon]                                       
[Processing: pybind11_colcon]                                       
[Processing: pybind11_colcon]                                       
[Processing: pybind11_colcon]                                       
--- stderr: pybind11_colcon                                          
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 2.8.12 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_COMPILE_COMMANDS


Cloning into 'pybind11_src'...
HEAD is now at 914c06fb chore: set to version 2.9.2
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
lto-wrapper: warning: using serial compilation of 84 LTRANS jobs
lto-wrapper: warning: using serial compilation of 10 LTRANS jobs
lto-wrapper: warning: using serial compilation of 2 LTRANS jobs
make[3]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
---
Finished <<< pybind11_colcon [2min 57s]
Starting >>> open3d_colcon
--- stderr: open3d_colcon                               
CMake Deprecation Warning at Open3D/CMakeLists.txt:183 (cmake_policy):
  The OLD behavior for policy CMP0072 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Error at /home/pckung/.local/lib/python3.10/site-packages/cmake/data/share/cmake-3.26/Modules/CMakeDetermineCompilerId.cmake:751 (message):
  Compiling the CUDA compiler identification source file
  "CMakeCUDACompilerId.cu" failed.

  Compiler: /usr/bin/nvcc

  Build flags:

  Id flags: --keep;--keep-dir;tmp -v



  The output was:

  1

  #$ _NVVM_BRANCH_=nvvm

  #$ _SPACE_=

  #$ _CUDART_=cudart

  #$ _HERE_=/usr/lib/nvidia-cuda-toolkit/bin

  #$ _THERE_=/usr/lib/nvidia-cuda-toolkit/bin

  #$ _TARGET_SIZE_=

  #$ _TARGET_DIR_=

  #$ _TARGET_SIZE_=64

  #$ NVVMIR_LIBRARY_DIR=/usr/lib/nvidia-cuda-toolkit/libdevice

  #$
  PATH=/usr/lib/nvidia-cuda-toolkit/bin:/home/pckung/gira3d-reconstruction/wet/install/sogmm_py:/home/pckung/gira3d-reconstruction/dry/install/pybind11_colcon:/home/pckung/gira3d-reconstruction/dry/install/nanoflann_colcon:/home/pckung/gira3d-reconstruction/dry/install/eigen_colcon:/home/pckung/gira3d-registration/wet/install/gmm_d2d_registration_py:/home/pckung/gira3d-registration/wet/install/gmm_d2d_registration:/home/pckung/gira3d-registration/wet/install/gmm:/home/pckung/gira3d-registration/dry/install/pybind11_colcon:/home/pckung/gira3d-registration/dry/install/mtimesx_colcon:/home/pckung/gira3d-registration/dry/install/gtsam_colcon:/home/pckung/gira3d-registration/dry/install/eigen_colcon:/home/pckung/gira3d-registration/dry/install/dlib_colcon:/home/pckung/gira3d-registration/.venv/bin:/home/pckung/.local/bin:/home/pckung/anaconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/pckung/.dotnet/tools


  #$ LIBRARIES= -L/usr/lib/x86_64-linux-gnu/stubs -L/usr/lib/x86_64-linux-gnu

  #$ rm tmp/a_dlink.reg.c

  #$ gcc -D__CUDA_ARCH__=520 -D__CUDA_ARCH_LIST__=520 -E -x c++
  -DCUDA_DOUBLE_MATH_FUNCTIONS -D__CUDACC__ -D__NVCC__
  -D__CUDACC_VER_MAJOR__=11 -D__CUDACC_VER_MINOR__=5
  -D__CUDACC_VER_BUILD__=119 -D__CUDA_API_VER_MAJOR__=11
  -D__CUDA_API_VER_MINOR__=5 -D__NVCC_DIAG_PRAGMA_SUPPORT__=1 -include
  "cuda_runtime.h" -m64 "CMakeCUDACompilerId.cu" -o
  "tmp/CMakeCUDACompilerId.cpp1.ii"

  #$ cicc --c++14 --gnu_version=100500 --display_error_number
  --orig_src_file_name "CMakeCUDACompilerId.cu" --orig_src_path_name
  "/home/pckung/gira3d-reconstruction/dry/build/open3d_colcon/CMakeFiles/3.26.3/CompilerIdCUDA/CMakeCUDACompilerId.cu"
  --allow_managed -arch compute_52 -m64 --no-version-ident -ftz=0 -prec_div=1
  -prec_sqrt=1 -fmad=1 --include_file_name "CMakeCUDACompilerId.fatbin.c"
  -tused --gen_module_id_file --module_id_file_name
  "tmp/CMakeCUDACompilerId.module_id" --gen_c_file_name
  "tmp/CMakeCUDACompilerId.cudafe1.c" --stub_file_name
  "tmp/CMakeCUDACompilerId.cudafe1.stub.c" --gen_device_file_name
  "tmp/CMakeCUDACompilerId.cudafe1.gpu" "tmp/CMakeCUDACompilerId.cpp1.ii" -o
  "tmp/CMakeCUDACompilerId.ptx"

  /usr/include/c++/11/bits/stl_pair.h(460): error: argument list for class
  template "std::pair" is missing



  /usr/include/c++/11/bits/stl_pair.h(460): error: expected a ")"



  /usr/include/c++/11/bits/stl_pair.h(460): error: template parameter "_T1"
  may not be redeclared in this scope



  /usr/include/c++/11/bits/stl_pair.h(460): error: expected a ";"



  4 errors detected in the compilation of "CMakeCUDACompilerId.cu".

  # --error 0x1 --





Call Stack (most recent call first):
  /home/pckung/.local/lib/python3.10/site-packages/cmake/data/share/cmake-3.26/Modules/CMakeDetermineCompilerId.cmake:8 (CMAKE_DETERMINE_COMPILER_ID_BUILD)
  /home/pckung/.local/lib/python3.10/site-packages/cmake/data/share/cmake-3.26/Modules/CMakeDetermineCompilerId.cmake:53 (__determine_compiler_id_test)
  /home/pckung/.local/lib/python3.10/site-packages/cmake/data/share/cmake-3.26/Modules/CMakeDetermineCUDACompiler.cmake:307 (CMAKE_DETERMINE_COMPILER_ID)
  Open3D/CMakeLists.txt:395 (enable_language)


---
Failed   <<< open3d_colcon [0.93s, exited with code 1]
                                      
Summary: 3 packages finished [2min 59s]
  1 package failed: open3d_colcon
  4 packages had stderr output: eigen_colcon nanoflann_colcon open3d_colcon pybind11_colcon
Starting >>> self_organizing_gmm
Starting >>> sogmm_py
Finished <<< sogmm_py [0.64s]                                                         
--- stderr: self_organizing_gmm                         
CMake Error at /home/pckung/.local/lib/python3.10/site-packages/cmake/data/share/cmake-3.26/Modules/FindPackageHandleStandardArgs.cmake:230 (message):
  Could NOT find GSL (missing: GSL_INCLUDE_DIR GSL_LIBRARY GSL_CBLAS_LIBRARY)
  (found version "")
Call Stack (most recent call first):
  /home/pckung/.local/lib/python3.10/site-packages/cmake/data/share/cmake-3.26/Modules/FindPackageHandleStandardArgs.cmake:600 (_FPHSA_FAILURE_MESSAGE)
  /home/pckung/.local/lib/python3.10/site-packages/cmake/data/share/cmake-3.26/Modules/FindGSL.cmake:151 (find_package_handle_standard_args)
  CMakeLists.txt:37 (find_package)


---
Failed   <<< self_organizing_gmm [0.72s, exited with code 1]

Summary: 1 package finished [1.22s]
  1 package failed: self_organizing_gmm
  1 package had stderr output: self_organizing_gmm
  1 package not processed
make: *** No rule to make target 'install-pip-package'.  Stop.

Have you ever run into the same error? Seems like it's related to the open3d_colon.
My desktop is running Ubuntu 20 with an A6000 GPU. CUDA v11.5
Thank you for the help!

Answered by kshitijgoel007

Apr 28, 2024

Closing due to inactivity.

View full answer

kshitijgoel007 · 2023-12-19T05:47:05Z

kshitijgoel007
Dec 19, 2023
Maintainer

Hi @kungfrank,

Thanks for reporting the error. I can see an error in this line

Compiling the CUDA compiler identification source file
  "CMakeCUDACompilerId.cu" failed.

It seems there is a potential fix here NVlabs/instant-ngp#923. Can you try?

Note that we have not tested this code with CUDA v11.5. You can maintain different versions of CUDA using this guide: https://askubuntu.com/a/1482177

0 replies

kshitijgoel007 · 2023-12-19T05:51:18Z

kshitijgoel007
Dec 19, 2023
Maintainer

For the errors

/usr/include/c++/11/bits/stl_pair.h(460): error: argument list for class
  template "std::pair" is missing



  /usr/include/c++/11/bits/stl_pair.h(460): error: expected a ")"



  /usr/include/c++/11/bits/stl_pair.h(460): error: template parameter "_T1"
  may not be redeclared in this scope



  /usr/include/c++/11/bits/stl_pair.h(460): error: expected a ";"



  4 errors detected in the compilation of "CMakeCUDACompilerId.cu".

according to https://stackoverflow.com/questions/68405505/compiler-error-rust-cc-and-cuda-nvcc-stdpair-is-missing and https://forums.developer.nvidia.com/t/ubuntu-20-04-gcc-9-3-cuda-toolkit-11-3-not-a-supported-combination/193486/9, upgrading nvcc (and hence CUDA) is advised.

0 replies

kshitijgoel007 · 2024-04-28T20:45:20Z

kshitijgoel007
Apr 28, 2024
Maintainer

Closing due to inactivity.

0 replies

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Fail to build open3d_colcon #5

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Fail to build open3d_colcon #5

kungfrank Dec 15, 2023

Replies: 3 comments

kshitijgoel007 Dec 19, 2023 Maintainer

kshitijgoel007 Dec 19, 2023 Maintainer

kshitijgoel007 Apr 28, 2024 Maintainer

kungfrank
Dec 15, 2023

kshitijgoel007
Dec 19, 2023
Maintainer

kshitijgoel007
Dec 19, 2023
Maintainer

kshitijgoel007
Apr 28, 2024
Maintainer