From 694d0e30828a38873929171e95df474fdca2030f Mon Sep 17 00:00:00 2001 From: shaze Date: Tue, 21 Aug 2018 21:02:18 +0200 Subject: [PATCH] minor fix --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 11ea7392..1e475d68 100644 --- a/README.md +++ b/README.md @@ -526,7 +526,7 @@ sample_label=Institute Sample Label plate=Sample Plate well=Well batch=Batch Comment -``` +```` * `output_align`. This can be one of three values: _dbsnp_, _ref_, and _db2ref_. dnsnp and ref assume that the input is in TOP/BOT format. If dbsnp, the output will be aligned to the dbSNP report, if "ref", the output will be aligned to a given reference strand. Many of the SNPs will be flipped (e.g. an A/C SNP will become G/T; and A/T SNP will become T/A). _db2ref_ assumes the input is in FORWARD format and aligns to to the given reference genome. @@ -576,9 +576,9 @@ In the quick start we gave an overview of running our workflows in different en This option requires that all dependancies have been installed. You run the code by saying -``` +```` nextflow run plink-qc.nf -``` +```` You can add that any extra parameters at the end.