From ac032e87b9ef922bb3c348337acc16b663c47c1b Mon Sep 17 00:00:00 2001 From: amjjbonvin Date: Sat, 23 Nov 2024 10:07:19 +0100 Subject: [PATCH] More formatting --- .../HADDOCK24/HADDOCK24-antibody-antigen-basic/index.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/education/HADDOCK24/HADDOCK24-antibody-antigen-basic/index.md b/education/HADDOCK24/HADDOCK24-antibody-antigen-basic/index.md index d20ca1fc..ae9968e0 100644 --- a/education/HADDOCK24/HADDOCK24-antibody-antigen-basic/index.md +++ b/education/HADDOCK24/HADDOCK24-antibody-antigen-basic/index.md @@ -738,13 +738,13 @@ Examine the various models. How does the orientation of the antigen differ betwe When looking at the structures generated by AlphaFold in PyMOL, the pLDDT is encoded as the B-factor.
- To color the model according to the pLDDT type in PyMOL: + To color the model according to the pLDDT type in PyMOL:

spectrum b - - **Note** that the scale in the B-factor field is the inverse of the color coding in the PAE plots: +
+ Note that the scale in the B-factor field is the inverse of the color coding in the PAE plots: i.e. red mean reliable (high pLDDT) and blue unreliable (low pLDDT)). If you want to have the inverse coloring you can use a PyMol plugin, e.g. as described here.