From 5105830612de173e99e37962758b38bab5f63a51 Mon Sep 17 00:00:00 2001
From: Theodore Kisner <tskisner.public@gmail.com>
Date: Fri, 12 Jan 2018 09:54:29 -0800
Subject: [PATCH] Change back to installing conda into /usr to work around
 change in NERSC docker runtime environment.

---
 external/.dockerignore             |  1 +
 external/tools/Dockerfile-intel.in | 16 +++++++++++-----
 external/tools/Dockerfile.in       | 16 +++++++++++-----
 external/tools/apply_conf.sh       |  7 ++-----
 4 files changed, 25 insertions(+), 15 deletions(-)

diff --git a/external/.dockerignore b/external/.dockerignore
index a72151022..066db6a0a 100644
--- a/external/.dockerignore
+++ b/external/.dockerignore
@@ -3,3 +3,4 @@ conf
 README*
 tools
 Docker*
+install*
diff --git a/external/tools/Dockerfile-intel.in b/external/tools/Dockerfile-intel.in
index 9a45eed81..67979f4c6 100644
--- a/external/tools/Dockerfile-intel.in
+++ b/external/tools/Dockerfile-intel.in
@@ -17,8 +17,8 @@ RUN apt-get update \
 # Set up locales, to workaround a pip bug
 
 RUN locale-gen en_US.UTF-8
-ENV LANG en_US.UTF-8 
-ENV LANGUAGE en_US:en 
+ENV LANG en_US.UTF-8
+ENV LANGUAGE en_US:en
 ENV LC_ALL en_US.UTF-8
 
 # We install everything directly into /usr so that we do
@@ -47,6 +47,13 @@ ENV PYTHONUSERBASE "/tmp"
 
 @pip_pkgs@
 
+# The conda TCL packages overwrite the system-installed regex.h.  So
+# now we force reinstall of the package that provides that
+
+RUN apt-get update \
+    && apt-get install -y --reinstall libc6-dev \
+    && rm -fr /var/lib/apt/lists/*
+
 # Install Intel tools to /opt/intel.  We assume that the build context already
 # contains a copy of the Intel tools, and we just copy it into the image.
 
@@ -66,8 +73,8 @@ RUN cp -a /opt/intel/mkl/lib/intel64/* /usr/lib/
 RUN mkdir ./rules
 ADD rules/patch_* ./rules/
 
-RUN mkdir -p /usr/lib/python3.6/site-packages
-ENV PYTHONPATH /usr/lib/python3.6/site-packages
+#RUN mkdir -p /usr/lib/python3.6/site-packages
+#ENV PYTHONPATH /usr/lib/python3.6/site-packages
 
 # Install MPICH 3.2 which is compatible with the external
 # Cray MPICH which is prepended to LD_LIBRARY_PATH as part
@@ -183,4 +190,3 @@ ENV HOME /home/toast
 
 ENTRYPOINT ["/bin/bash", "-c"]
 CMD ["/bin/bash"]
-
diff --git a/external/tools/Dockerfile.in b/external/tools/Dockerfile.in
index b476e7eaf..aed9b5db5 100644
--- a/external/tools/Dockerfile.in
+++ b/external/tools/Dockerfile.in
@@ -17,8 +17,8 @@ RUN apt-get update \
 # Set up locales, to workaround a pip bug
 
 RUN locale-gen en_US.UTF-8
-ENV LANG en_US.UTF-8 
-ENV LANGUAGE en_US:en 
+ENV LANG en_US.UTF-8
+ENV LANGUAGE en_US:en
 ENV LC_ALL en_US.UTF-8
 
 # We install everything directly into /usr so that we do
@@ -47,13 +47,20 @@ ENV PYTHONUSERBASE "/tmp"
 
 @pip_pkgs@
 
+# The conda TCL packages overwrite the system-installed regex.h.  So
+# now we force reinstall of the package that provides that
+
+RUN apt-get update \
+    && apt-get install -y --reinstall libc6-dev \
+    && rm -fr /var/lib/apt/lists/*
+
 # Copy all patch files to current working directory
 
 RUN mkdir ./rules
 ADD rules/patch_* ./rules/
 
-RUN mkdir -p /usr/lib/python3.6/site-packages
-ENV PYTHONPATH /usr/lib/python3.6/site-packages
+#RUN mkdir -p /usr/lib/python3.6/site-packages
+#ENV PYTHONPATH /usr/lib/python3.6/site-packages
 
 # Install MPICH 3.2 which is compatible with the external
 # Cray MPICH which is prepended to LD_LIBRARY_PATH as part
@@ -149,4 +156,3 @@ RUN python -c "import matplotlib.font_manager as fm; f = fm.FontManager"
 
 ENTRYPOINT ["/bin/bash", "-c"]
 CMD ["/bin/bash"]
-
diff --git a/external/tools/apply_conf.sh b/external/tools/apply_conf.sh
index 454c31046..46e30712b 100755
--- a/external/tools/apply_conf.sh
+++ b/external/tools/apply_conf.sh
@@ -14,7 +14,7 @@ module_dir="${moddir}/toast-deps"
 
 if [ "x${docker}" = "xyes" ]; then
     compiled_prefix="/usr"
-    conda_prefix="/usr/local"
+    conda_prefix="/usr"
 fi
 
 # Create list of substitutions
@@ -27,7 +27,7 @@ while IFS='' read -r line || [[ -n "${line}" ]]; do
     if [ "${comment}" != "#" ]; then
 
         check=$(echo "${line}" | sed -e "s#.*=.*#=#")
-    
+
         if [ "x${check}" = "x=" ]; then
             # get the variable and its value
             var=$(echo ${line} | sed -e "s#\([^=]*\)=.*#\1#" | awk '{print $1}')
@@ -52,6 +52,3 @@ rm -f "${outfile}"
 while IFS='' read -r line || [[ -n "${line}" ]]; do
     echo "${line}" | eval sed ${confsub} >> "${outfile}"
 done < "${infile}"
-
-
-