_pkgdown.yml

url: https://hyunjimoon.github.io/SBC/

template:
  params:
    bootswatch: cosmo

navbar:
  title: "SBC"
  left:
    - text: "Get Started"
      href: articles/SBC.html
    - text: "Vignettes"
      href: articles/index.html
    - text: "Functions"
      href: reference/index.html
    - text: "Other Packages"
      menu:
        - text: "rstan"
          href: http://mc-stan.org/rstan
        - text: "cmdstanr"
          href: https://mc-stan.org/cmdstanr
        - text: "brms"
          href: http://paul-buerkner.github.io/brms/
        - text: "rstanarm"
          href: http://mc-stan.org/rstanarm
        - text: "bayesplot"
          href: http://mc-stan.org/bayesplot
        - text: "shinystan"
          href: http://mc-stan.org/shinystan
        - text: "loo"
          href: http://mc-stan.org/loo
        - text: "projpred"
          href: http://mc-stan.org/projpred
        - text: "rstantools"
          href: http://mc-stan.org/rstantools
        - text: "posterior"
          href: https://mc-stan.org/posterior
    - text: "Stan"
      href: http://mc-stan.org
  right:
   - icon: fa-twitter
     href: https://twitter.com/mcmc_stan
   - icon: fa-github
     href: https://github.com/hyunjimoon/SBC
   - icon: fa-users
     href: http://discourse.mc-stan.org/

home:
  links:
  - text: Ask a question
    href: http://discourse.mc-stan.org/

articles:
  - title: "Getting started"
    desc: >
      Understanding the basic usage and philosophy of the package
    contents:
      - SBC
      - rank_visualizations
  - title: "Using SBC for debugging/validating Stan models"
    desc: >
      Case studies showing how problems in a Stan model can be discovered with SBC.
    contents:
      - bad_parametrization
      - indexing
      - small_model_workflow
  - title: "Additional use cases and advanced topics"
    contents:
      - limits_of_SBC
      - computational_algorithm1
      - implementing_backends
      - brms
      - discrete_vars
      - rejection_sampling

reference:
- title: Datasets
  desc:  Generating datasets ready for use with SBC and working with them.
- contents:
  - contains("dataset")
  - starts_with("SBC_generator_")
  - calculate_prior_sd
- title: Backends
  desc: Represent various inference engines you can use with SBC.
- contents:
  - starts_with("SBC_backend")
  - starts_with("SBC_fit")
- title: Computation & results
  desc: Functions related to running the SBC computation and handling the results.
- contents:
  - compute_SBC
  - contains("SBC_results")
  - contains("derived_quantities")
  - contains("dquants")
  - bind_globals
  - SBC_statistics_from_single_fit
  - recompute_SBC_statistics
  - bind_results
  - calculate_ranks_draws_matrix
  - contains("diagnostic")
  - default_chunk_size
  - default_cores_per_fit
- title: Plotting & Summarising
  desc: Plotting and summarising results
- contents:
  - contains("plot")
  - guess_rank_hist_bins
  - empirical_coverage
  - starts_with("combine_")
- title: Examples
  desc: Functions to let you easily test the pacakge
- contents:
  - contains("example")
- title: Miscellaneous
- contents:
  - wasserstein
  - cjs_dist
  - combine_args
  - max_diff
  - rank2unif
  - set2set

footer:
  structure:
    left: [developed_by, break, built_with]
    right: analytics
  components:
    break : "\n\n"
    analytics: |
      This site uses [Plausible.io](https://plausible.io) for privacy-friendly web analytics (no cookies, no tracking).

      Our stats are public at:  https://plausible.io/hyunjimoon.github.io