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How do I run an ijm script? #43

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kylegalloway opened this issue Oct 14, 2020 · 0 comments
Open

How do I run an ijm script? #43

kylegalloway opened this issue Oct 14, 2020 · 0 comments

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@kylegalloway
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kylegalloway commented Oct 14, 2020

I'm attempting to run an ijm script by changing the example that runs a python script.

The script I'm attempting to run is as follows:

run("Set Scale...", "distance=4.585 known=1 pixel=1 unit=µm");
setAutoThreshold("MaxEntropy dark");
setOption("BlackBackground", true);
run("Convert to Mask");
run("Despeckle");
run("Watershed");
run("Analyze Particles...", "size=16-Infinity circularity=0.50-1.00 display exclude summarize");

I tried setting language to ijm and in1 to the script but that caused an error. I tried escaping the quotes, parentheses, and replacing the newlines with \n and that still caused an error. I tried changing in1 to be script and removing in2 and I'm still seeing errors.

Any help would be appreciated.

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