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The shape of embedding issue #80

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WhiteNan opened this issue Oct 24, 2024 · 2 comments
Open

The shape of embedding issue #80

WhiteNan opened this issue Oct 24, 2024 · 2 comments

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@WhiteNan
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Thank you for publishing NCTransformer.
I found that the feature lengths obtained by inputting multiple sequences of the same length into NCTransformer are not the same.I would like to know if you have encountered such a problem in downstream tasks, and how should this situation be handled? Is it filled to the same length?
Looking forward to your reply.

@WhiteNan
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I ran the feature extraction code and inputted a sequence of length 4, resulting in [4,2,2560]. I would like to know what 2 represents? And whether the generated features contain markers at the beginning of the sequence.

@WhiteNan
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I ran the feature extraction code and inputted a sequence of length 4, resulting in [4,2,2560]. I would like to know what 2 represents? And whether the generated features contain markers at the beginning of the sequence.

The input format I am using is "ATGC", not ["ATGC"].

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